Functional clusters
Information
- Type InterPro
- Description FMN-dependent dehydrogenase
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr1 | 5 | CH_acertr_313 | 3 | 3 | 0.000000260925 |
| Actinidia chinensis | Lachesis_group27 | 5 | CH_ach_169 | 3 | 4 | 0.00000148702 |
| Arabidopsis lyrata | scaffold_3 | 5 | CH_aly_312 | 4 | 43 | 0.00000159173 |
| Arabidopsis thaliana | Chr3 | 5 | CH_ath_216 | 4 | 56 | 0.000000129382 |
| Brassica carinata | ChrB04 | 5 | CH_bca_809 | 4 | 27 | 0.00000156905 |
| Brassica oleracea | C5 | 5 | CH_bol_472 | 4 | 61 | 0.0000179319 |
| Brassica oleracea | C3 | 5 | CH_bol_805 | 3 | 24 | 0.000533921 |
| Camellia sinensis var. sinensis | Chr15 | 5 | CH_camsi_6 | 17 | 26 | 1.70892e-49 |
| Cannabis sativa | NC_044371.1 | 5 | CH_cansat_454 | 2 | 2 | 0.000196993 |
| Corylus avellana | 11 | 5 | CH_cav_125 | 4 | 5 | 0.000000000101404 |
| Citrus clementina | scaffold_7 | 5 | CH_ccl_264 | 4 | 14 | 0.0000000248412 |
| Cardamine hirsuta | Chr3 | 5 | CH_chi_328 | 4 | 38 | 0.00000109369 |
| Carya illinoinensis | Chr01 | 5 | CH_cil_176 | 4 | 4 | 0.0000000000107168 |
| Citrullus lanatus | CG_Chr07 | 5 | CH_cla_89 | 3 | 3 | 0.0000000472204 |
| Corchorus olitorius | AWUE01020789.1 | 5 | CH_col_202 | 2 | 2 | 0.000876296 |
| Capsella rubella | scaffold_3 | 5 | CH_cru_639 | 2 | 2 | 0.000731154 |
| Cucumis sativus L. | chr3 | 5 | CH_csa_163 | 3 | 3 | 0.0000000418111 |
| Eucalyptus grandis | Chr06 | 5 | CH_egr_1400 | 2 | 2 | 0.000877912 |
| Eucalyptus grandis | Chr05 | 5 | CH_egr_1401 | 2 | 2 | 0.000877912 |
| Erythranthe guttata | scaffold_13 | 5 | CH_egut_646 | 2 | 2 | 0.000436888 |
| Eutrema salsugineum | scaffold_13 | 5 | CH_esa_495 | 3 | 38 | 0.000731366 |
| Gossypium hirsutum | D06 | 5 | CH_ghi_627 | 3 | 3 | 0.00000278063 |
| Glycine max | Gm08 | 5 | CH_gma_92 | 5 | 7 | 0.0000000000000823671 |
| Gossypium raimondii | Chr10 | 5 | CH_gra_288 | 3 | 3 | 0.000000517353 |
| Hydrangea macrophylla | Hma1.2p1_0090F.1 | 5 | CH_hma_121 | 3 | 3 | 0.0000000740453 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 5 | CH_lsa_814 | 2 | 2 | 0.000514007 |
| Malus domestica | Chr09 | 5 | CH_mdo_1386 | 2 | 2 | 0.000796344 |
| Manihot esculenta | Chromosome11 | 5 | CH_mes_620 | 2 | 2 | 0.000366379 |
| Punica granatum | NC_045132.1 | 5 | CH_pgr_40 | 6 | 8 | 1.04925e-17 |
| Prunus persica | Pp03 | 5 | CH_ppe_751 | 2 | 2 | 0.000447577 |
| Pisum sativum | chr7LG7 | 5 | CH_psa_93 | 4 | 4 | 0.0000000000298094 |
| Populus trichocarpa | Chr03 | 5 | CH_ptr_314 | 3 | 3 | 0.000000100229 |
| Quercus lobata | 5 | 5 | CH_qlo_141 | 8 | 16 | 1.96142e-21 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_156 | 6 | 10 | 4.39461e-16 |
| Rhododendron simsii | chr13 | 5 | CH_rsi_776 | 2 | 2 | 0.000193592 |
| Salix brachista | GWHAAZH00000003 | 5 | CH_sbr_591 | 2 | 2 | 0.000378084 |
| Simmondsia chinensis | GWHAASQ00000015 | 5 | CH_sci_124 | 3 | 3 | 0.000000108744 |
| Sechium edule | LG10 | 5 | CH_sed_144 | 3 | 3 | 0.0000000763478 |
| Sequoiadendron giganteum | chr8 | 5 | CH_sgi_1417 | 3 | 6 | 0.00000597812 |
| Sequoiadendron giganteum | chr4 | 5 | CH_sgi_227 | 6 | 6 | 5.18665e-19 |
| Sapria himalayana | scaffold13_12996478 | 5 | CH_shi_114 | 3 | 3 | 0.0000000196182 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_98 | 5 | 5 | 0.00000000000000498543 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_260 | 3 | 3 | 0.0000000593529 |
| Solanum tuberosum | ST4.03ch03 | 5 | CH_stu_177 | 4 | 4 | 0.0000000000141314 |
| Trochodendron aralioides | group6 | 5 | CH_tar_759 | 2 | 2 | 0.00036022 |
| Theobroma cacao | Chromosome_6 | 5 | CH_tca_338 | 3 | 4 | 0.000000321816 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 5 | CH_tpr_153 | 3 | 3 | 0.00000000859546 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_287 | 3 | 3 | 0.00000213722 |
| Vaccinium macrocarpon | chr6_Vaccinium_macrocarpon_Stevens_v1 | 5 | CH_vma_529 | 3 | 8 | 0.00011949 |
| Vanilla planifolia | CM028158.1 | 5 | CH_vpl_697 | 2 | 2 | 0.00073888 |
| Acer truncatum | chr1 | 6 | CH_acertr_313 | 3 | 3 | 0.000000260925 |
| Actinidia chinensis | Lachesis_group27 | 6 | CH_ach_169 | 3 | 4 | 0.00000148702 |
| Arabidopsis lyrata | scaffold_3 | 6 | CH_aly_312 | 4 | 43 | 0.00000159173 |
| Arabidopsis thaliana | Chr3 | 6 | CH_ath_216 | 4 | 56 | 0.000000129382 |
| Brassica carinata | ChrB04 | 6 | CH_bca_809 | 4 | 27 | 0.00000156905 |
| Brassica oleracea | C5 | 6 | CH_bol_472 | 4 | 61 | 0.0000179319 |
| Brassica oleracea | C3 | 6 | CH_bol_805 | 3 | 24 | 0.000533921 |
| Camellia sinensis var. sinensis | Chr15 | 6 | CH_camsi_6 | 17 | 26 | 1.70892e-49 |
| Cannabis sativa | NC_044371.1 | 6 | CH_cansat_454 | 2 | 2 | 0.000196993 |
| Corylus avellana | 11 | 6 | CH_cav_125 | 4 | 5 | 0.000000000101404 |
| Citrus clementina | scaffold_7 | 6 | CH_ccl_264 | 4 | 14 | 0.0000000248412 |
| Cardamine hirsuta | Chr3 | 6 | CH_chi_328 | 4 | 38 | 0.00000109369 |
| Carya illinoinensis | Chr01 | 6 | CH_cil_176 | 4 | 4 | 0.0000000000107168 |
| Citrullus lanatus | CG_Chr07 | 6 | CH_cla_89 | 3 | 3 | 0.0000000472204 |
| Cucumis melo | chr04 | 6 | CH_cme_179 | 3 | 5 | 0.000000267 |
| Corchorus olitorius | AWUE01020789.1 | 6 | CH_col_202 | 2 | 2 | 0.000876296 |
| Capsella rubella | scaffold_3 | 6 | CH_cru_639 | 2 | 2 | 0.000731154 |
| Cucumis sativus L. | chr3 | 6 | CH_csa_163 | 3 | 3 | 0.0000000418111 |
| Eucalyptus grandis | Chr06 | 6 | CH_egr_1400 | 2 | 2 | 0.000877912 |
| Eucalyptus grandis | Chr05 | 6 | CH_egr_1401 | 2 | 2 | 0.000877912 |
| Erythranthe guttata | scaffold_13 | 6 | CH_egut_646 | 2 | 2 | 0.000436888 |
| Eutrema salsugineum | scaffold_13 | 6 | CH_esa_495 | 3 | 38 | 0.000731366 |
| Gossypium hirsutum | D06 | 6 | CH_ghi_627 | 3 | 3 | 0.00000278063 |
| Glycine max | Gm08 | 6 | CH_gma_92 | 5 | 7 | 0.0000000000000823671 |
| Gossypium raimondii | Chr10 | 6 | CH_gra_288 | 3 | 3 | 0.000000517353 |
| Hydrangea macrophylla | Hma1.2p1_0090F.1 | 6 | CH_hma_121 | 3 | 3 | 0.0000000740453 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 6 | CH_lsa_814 | 2 | 2 | 0.000514007 |
| Malus domestica | Chr09 | 6 | CH_mdo_1386 | 2 | 2 | 0.000796344 |
| Manihot esculenta | Chromosome11 | 6 | CH_mes_620 | 2 | 2 | 0.000366379 |
| Punica granatum | NC_045132.1 | 6 | CH_pgr_40 | 6 | 8 | 1.04925e-17 |
| Prunus persica | Pp03 | 6 | CH_ppe_751 | 2 | 2 | 0.000447577 |
| Pisum sativum | chr7LG7 | 6 | CH_psa_93 | 4 | 4 | 0.0000000000298094 |
| Populus trichocarpa | Chr03 | 6 | CH_ptr_314 | 3 | 3 | 0.000000100229 |
| Quercus lobata | 5 | 6 | CH_qlo_141 | 8 | 16 | 1.96142e-21 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_156 | 6 | 10 | 4.39461e-16 |
| Rhododendron simsii | chr13 | 6 | CH_rsi_776 | 2 | 2 | 0.000193592 |
| Salix brachista | GWHAAZH00000003 | 6 | CH_sbr_591 | 2 | 2 | 0.000378084 |
| Simmondsia chinensis | GWHAASQ00000015 | 6 | CH_sci_124 | 3 | 3 | 0.000000108744 |
| Sechium edule | LG10 | 6 | CH_sed_144 | 3 | 3 | 0.0000000763478 |
| Sequoiadendron giganteum | chr8 | 6 | CH_sgi_1417 | 3 | 6 | 0.00000597812 |
| Sequoiadendron giganteum | chr4 | 6 | CH_sgi_227 | 6 | 6 | 5.18665e-19 |
| Sapria himalayana | scaffold13_12996478 | 6 | CH_shi_114 | 3 | 3 | 0.0000000196182 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_98 | 5 | 5 | 0.00000000000000498543 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_260 | 3 | 3 | 0.0000000593529 |
| Solanum tuberosum | ST4.03ch03 | 6 | CH_stu_177 | 4 | 4 | 0.0000000000141314 |
| Trochodendron aralioides | group6 | 6 | CH_tar_759 | 2 | 2 | 0.00036022 |
| Theobroma cacao | Chromosome_6 | 6 | CH_tca_338 | 3 | 4 | 0.000000321816 |
| Trifolium pratense | Tp57577_TGAC_v2_LG3 | 6 | CH_tpr_153 | 3 | 3 | 0.00000000859546 |
| Vaccinium macrocarpon | chr7_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_287 | 3 | 3 | 0.00000213722 |
| Vaccinium macrocarpon | chr6_Vaccinium_macrocarpon_Stevens_v1 | 6 | CH_vma_529 | 3 | 8 | 0.00011949 |
| Vanilla planifolia | CM028158.1 | 6 | CH_vpl_697 | 2 | 2 | 0.00073888 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |