Functional clusters

Information

  • Type Gene Ontology
  • Description regulation of biological quality

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB01 3 CH_bca_745 9 33 0.000313327
Punica granatum NC_045132.1 3 CH_pgr_339 9 24 0.000349035
Sequoiadendron giganteum chr11 3 CH_sgi_618 15 64 0.00000013057
Brassica carinata ChrB01 4 CH_bca_745 9 33 0.000313327
Punica granatum NC_045132.1 4 CH_pgr_339 9 24 0.000349035
Sequoiadendron giganteum chr11 4 CH_sgi_618 15 64 0.00000013057

Available child term results

Ontology identifier Description Number of clusters
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0006581 acetylcholine catabolic process 2
GO:0006876 cellular cadmium ion homeostasis 4
GO:0006880 intracellular sequestering of iron ion 60
GO:0006885 regulation of pH 2
GO:0007204 positive regulation of cytosolic calcium ion concentration 4
GO:0009684 indoleacetic acid biosynthetic process 2
GO:0009690 cytokinin metabolic process 10
GO:0009691 cytokinin biosynthetic process 2
GO:0009823 cytokinin catabolic process 18
GO:0009850 auxin metabolic process 14
GO:0009851 auxin biosynthetic process 2
GO:0009852 auxin catabolic process 24
GO:0009992 cellular water homeostasis 24
GO:0010106 cellular response to iron ion starvation 4
GO:0010184 cytokinin transport 18
GO:0010217 cellular aluminum ion homeostasis 2
GO:0010268 brassinosteroid homeostasis 14
GO:0010315 auxin efflux 16
GO:0010422 regulation of brassinosteroid biosynthetic process 44
GO:0010540 basipetal auxin transport 6
GO:0010541 acropetal auxin transport 10
GO:0010601 positive regulation of auxin biosynthetic process 2
GO:0010817 regulation of hormone levels 2
GO:0010960 magnesium ion homeostasis 26
GO:0016131 brassinosteroid metabolic process 2
GO:0017121 plasma membrane phospholipid scrambling 10
GO:0019725 cellular homeostasis 2
GO:0030007 cellular potassium ion homeostasis 2
GO:0030026 cellular manganese ion homeostasis 66
GO:0030104 water homeostasis 2
GO:0030187 melatonin biosynthetic process 4
GO:0030643 cellular phosphate ion homeostasis 4
GO:0030644 cellular chloride ion homeostasis 22
GO:0030833 regulation of actin filament polymerization 10
GO:0031647 regulation of protein stability 6
GO:0031648 protein destabilization 4
GO:0032119 sequestering of zinc ion 2
GO:0032469 endoplasmic reticulum calcium ion homeostasis 2
GO:0033214 siderophore-dependent iron import into cell 26
GO:0033466 trans-zeatin biosynthetic process 2
GO:0033473 indoleacetic acid conjugate metabolic process 2
GO:0033484 nitric oxide homeostasis 6
GO:0034203 glycolipid translocation 2
GO:0034314 Arp2/3 complex-mediated actin nucleation 12
GO:0034754 cellular hormone metabolic process 4
GO:0042445 hormone metabolic process 2
GO:0042446 hormone biosynthetic process 2
GO:0042592 homeostatic process 2
GO:0045010 actin nucleation 2
GO:0045454 cell redox homeostasis 2
GO:0045792 negative regulation of cell size 6
GO:0045793 positive regulation of cell size 20
GO:0045851 pH reduction 22
GO:0046719 regulation by virus of viral protein levels in host cell 4
GO:0046885 regulation of hormone biosynthetic process 2
GO:0048255 mRNA stabilization 4
GO:0048878 chemical homeostasis 2
GO:0050821 protein stabilization 4
GO:0050891 multicellular organismal water homeostasis 2
GO:0051127 positive regulation of actin nucleation 2
GO:0051208 sequestering of calcium ion 14
GO:0051453 regulation of intracellular pH 12
GO:0051560 mitochondrial calcium ion homeostasis 14
GO:0051562 negative regulation of mitochondrial calcium ion concentration 8
GO:0055062 phosphate ion homeostasis 6
GO:0055063 sulfate ion homeostasis 2
GO:0055065 metal ion homeostasis 2
GO:0055067 monovalent inorganic cation homeostasis 14
GO:0055068 cobalt ion homeostasis 10
GO:0055069 zinc ion homeostasis 46
GO:0055072 iron ion homeostasis 2
GO:0055073 cadmium ion homeostasis 56
GO:0055075 potassium ion homeostasis 2
GO:0055089 fatty acid homeostasis 8
GO:0060250 germ-line stem-cell niche homeostasis 2
GO:0060918 auxin transport 4
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0061635 regulation of protein complex stability 8
GO:0070328 triglyceride homeostasis 6
GO:0071333 cellular response to glucose stimulus 8
GO:0080024 indolebutyric acid metabolic process 2
GO:0080145 cysteine homeostasis 6
GO:0080162 intracellular auxin transport 92
GO:0090156 cellular sphingolipid homeostasis 4
GO:0090354 regulation of auxin metabolic process 6
GO:0090356 negative regulation of auxin metabolic process 14
GO:0097009 energy homeostasis 4
GO:0097298 regulation of nucleus size 4
GO:0097577 sequestering of iron ion 2
GO:0098711 iron ion import across plasma membrane 8
GO:0098771 inorganic ion homeostasis 2
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1901703 protein localization involved in auxin polar transport 6
GO:1901997 negative regulation of indoleacetic acid biosynthetic process via tryptophan 4
GO:1902265 abscisic acid homeostasis 6
GO:1902659 regulation of glucose mediated signaling pathway 4
GO:2000012 regulation of auxin polar transport 4
GO:2000769 regulation of establishment or maintenance of cell polarity regulating cell shape 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001