Functional clusters

Information

  • Type MapMan
  • Description Coenzyme metabolism.tetrahydrofolate metabolism.pterin biosynthesis.dihydroneopterin aldolase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-3 1 CH_aar_65 3 4 0.0000000499403
Amborella trichopoda AmTr_v1.0_scaffold00058 1 CH_atr_210 2 2 0.0000794407
Brassica napus A05 1 CH_bna_467 2 2 0.0000556545
Brassica rapa A05 1 CH_bra_242 2 2 0.000128794
Camellia sinensis var. sinensis Chr13 1 CH_camsi_810 2 5 0.000458516
Lotus japonicus chr6 1 CH_lja_102 3 3 0.0000000306812
Papaver somniferum NC_039366.1 1 CH_pso_589 2 2 0.000337849
Papaver somniferum NW_020650859.1 1 CH_pso_590 2 2 0.000337849
Rhododendron simsii chr03 1 CH_rsi_183 3 6 0.000000124918
Aethionema arabicum LG-3 2 CH_aar_65 3 4 0.0000000499403
Amborella trichopoda AmTr_v1.0_scaffold00058 2 CH_atr_210 2 2 0.0000794407
Brassica rapa A05 2 CH_bra_242 2 2 0.000128794
Camellia sinensis var. sinensis Chr13 2 CH_camsi_810 2 5 0.000458516
Lotus japonicus chr6 2 CH_lja_102 3 3 0.0000000306812
Papaver somniferum NC_039366.1 2 CH_pso_589 2 2 0.000337849
Papaver somniferum NW_020650859.1 2 CH_pso_590 2 2 0.000337849
Rhododendron simsii chr03 2 CH_rsi_183 3 6 0.000000124918

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001