Functional clusters

Information

  • Type MapMan
  • Description Coenzyme metabolism.chlorophyll metabolism.chlorophyll catabolism.PAO-phyllobilin pathway.red chlorophyll catabolite reductase (RCCR)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 1 CH_acertr_87 3 3 0.000000007455
Cannabis sativa NC_044377.1 1 CH_cansat_297 2 2 0.000196993
Corylus avellana 11 1 CH_cav_450 2 2 0.000689981
Citrus clementina scaffold_7 1 CH_ccl_310 2 2 0.0000820311
Carpinus fangiana Cfa01 1 CH_cfa_280 2 3 0.000227195
Citrullus lanatus CG_Chr02 1 CH_cla_124 2 2 0.0000887115
Cucumis melo chr11 1 CH_cme_186 2 2 0.0000667111
Cucumis sativus L. chr2 1 CH_csa_209 2 2 0.0000834759
Eutrema salsugineum scaffold_14 1 CH_esa_253 2 2 0.00022845
Helianthus annuus HanXRQChr14 1 CH_han_480 2 3 0.000115926
Hydrangea macrophylla Hma1.2p1_0200F.1 1 CH_hma_324 2 3 0.000333241
Marchantia polymorpha scaffold_2 1 CH_mpo_103 2 2 0.000331327
Oryza sativa ssp. japonica chr10 1 CH_osa_78 3 4 0.0000000167348
Populus trichocarpa Chr07 1 CH_ptr_136 3 3 0.00000000501143
Phaseolus vulgaris Chr08 1 CH_pvu_287 2 2 0.0000734727
Quercus lobata 6 1 CH_qlo_674 2 2 0.0000516289
Salix brachista GWHAAZH00000007 1 CH_sbr_228 2 2 0.000063014
Selenicereus undatus Scaffold_33679 1 CH_sun_68 3 15 0.00000360218
Acer truncatum chr3 2 CH_acertr_87 3 3 0.000000007455
Cannabis sativa NC_044377.1 2 CH_cansat_297 2 2 0.000196993
Corylus avellana 11 2 CH_cav_450 2 2 0.000689981
Citrus clementina scaffold_7 2 CH_ccl_310 2 2 0.0000820311
Carpinus fangiana Cfa01 2 CH_cfa_280 2 3 0.000227195
Citrullus lanatus CG_Chr02 2 CH_cla_124 2 2 0.0000887115
Cucumis melo chr11 2 CH_cme_186 2 2 0.0000667111
Cucumis sativus L. chr2 2 CH_csa_209 2 2 0.0000834759
Eutrema salsugineum scaffold_14 2 CH_esa_253 2 2 0.00022845
Helianthus annuus HanXRQChr14 2 CH_han_480 2 3 0.000115926
Hydrangea macrophylla Hma1.2p1_0200F.1 2 CH_hma_324 2 3 0.000333241
Marchantia polymorpha scaffold_2 2 CH_mpo_103 2 2 0.000331327
Oryza sativa ssp. japonica chr10 2 CH_osa_78 3 4 0.0000000167348
Populus trichocarpa Chr07 2 CH_ptr_136 3 3 0.00000000501143
Phaseolus vulgaris Chr08 2 CH_pvu_287 2 2 0.0000734727
Quercus lobata 6 2 CH_qlo_674 2 2 0.0000516289
Salix brachista GWHAAZH00000007 2 CH_sbr_228 2 2 0.000063014
Selenicereus undatus Scaffold_33679 2 CH_sun_68 3 15 0.00000360218

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001