Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.lipid degradation.fatty acid degradation.glyoxylate cycle
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr6 | 1 | CH_acertr_514 | 3 | 20 | 0.000474574 |
| Lupinus albus | Lalb_Chr03 | 1 | CH_lal_236 | 3 | 8 | 0.000129388 |
| Acer truncatum | chr6 | 2 | CH_acertr_514 | 3 | 20 | 0.000474574 |
| Lupinus albus | Lalb_Chr03 | 2 | CH_lal_236 | 3 | 8 | 0.000129388 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 5.7.3.6.1 | Lipid metabolism.lipid degradation.fatty acid degradation.glyoxylate cycle.citrate synthase | 17 |
| 5.7.3.6.2 | Lipid metabolism.lipid degradation.fatty acid degradation.glyoxylate cycle.aconitase | 17 |
| 5.7.3.6.3 | Lipid metabolism.lipid degradation.fatty acid degradation.glyoxylate cycle.isocitrate lyase | 18 |
| 5.7.3.6.4 | Lipid metabolism.lipid degradation.fatty acid degradation.glyoxylate cycle.malate synthase | 22 |
| 5.7.3.6.5 | Lipid metabolism.lipid degradation.fatty acid degradation.glyoxylate cycle.peroxisomal NAD-dependent malate dehydrogenase | 3 |
| 5.7.3.6.6.1 | Lipid metabolism.lipid degradation.fatty acid degradation.glyoxylate cycle.acetate-malate shunt.peroxisomal acetyl-CoA synthetase (ACN/BZU) | 20 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |