Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.lipid degradation.fatty acid degradation.auxiliary degradation activities.dodecenoyl-CoA isomerase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr12 1 CH_acertr_108 3 3 0.00000002982
Arabidopsis lyrata scaffold_7 1 CH_aly_316 2 2 0.000198013
Arabidopsis thaliana Chr4 1 CH_ath_330 2 3 0.000257837
Amborella trichopoda AmTr_v1.0_scaffold00101 1 CH_atr_294 2 2 0.000476644
Brassica carinata ChrC07 1 CH_bca_1164 2 2 0.000961939
Camellia sinensis var. sinensis Chr5 1 CH_camsi_732 2 2 0.000275128
Cannabis sativa NC_044373.1 1 CH_cansat_363 2 3 0.000590945
Coffea canephora chr2 1 CH_ccan_246 2 5 0.000127766
Cardamine hirsuta Chr7 1 CH_chi_303 2 2 0.000207361
Carya illinoinensis Chr15 1 CH_cil_487 2 2 0.000371897
Cucumis melo chr06 1 CH_cme_36 4 4 0.00000000000445379
Corchorus olitorius AWUE01015535.1 1 CH_col_77 2 2 0.000292099
Capsella rubella scaffold_7 1 CH_cru_328 2 2 0.000219346
Cucumis sativus L. chr3 1 CH_csa_48 4 4 0.00000000000872629
Daucus carota DCARv2_Chr4 1 CH_dca_104 3 3 0.0000000610156
Erigeron canadensis Conyza_canadensis_scaffold:1 1 CH_eca_173 3 5 0.00000060398
Eutrema salsugineum scaffold_1 1 CH_esa_251 2 2 0.00022845
Gossypium raimondii Chr05 1 CH_gra_420 2 2 0.000536107
Hydrangea macrophylla Hma1.2p1_0310F.1 1 CH_hma_352 2 2 0.000333259
Lupinus albus Lalb_Chr03 1 CH_lal_432 2 3 0.000944626
Magnolia biondii Chr06 1 CH_mbi_195 3 7 0.000000495247
Malus domestica Chr01 1 CH_mdo_562 2 2 0.000227527
Olea europaea chr18 1 CH_oeu_245 2 2 0.000160137
Petunia axillaris Peaxi162Scf00069 1 CH_pax_253 2 2 0.000211067
Punica granatum NC_045134.1 1 CH_pgr_113 3 4 0.000000135125
Pisum sativum chr1LG6 1 CH_psa_336 2 2 0.000312981
Pisum sativum chr3LG5 1 CH_psa_430 2 3 0.000938886
Rhododendron simsii chr09 1 CH_rsi_438 2 2 0.000193592
Salvia bowleyana GWHASIU00000003 1 CH_sbo_39 5 8 0.0000000000000107988
Sechium edule LG12 1 CH_sed_257 2 2 0.000214026
Sequoiadendron giganteum chr2 1 CH_sgi_186 5 12 0.0000000000000334527
Schrenkiella parvula ch7-4 1 CH_spa_74 3 3 0.0000000371957
Theobroma cacao Chromosome_4 1 CH_tca_350 2 2 0.000219716
Tarenaya hassleriana NW_010966881.1 1 CH_tha_125 3 17 0.000173832
Tripterygium wilfordii NC_052252.1 1 CH_twi_251 2 2 0.000334504
Acer truncatum chr12 2 CH_acertr_108 3 3 0.00000002982
Arabidopsis lyrata scaffold_7 2 CH_aly_316 2 2 0.000198013
Arabidopsis thaliana Chr4 2 CH_ath_330 2 3 0.000257837
Amborella trichopoda AmTr_v1.0_scaffold00101 2 CH_atr_294 2 2 0.000476644
Brassica carinata ChrC07 2 CH_bca_1164 2 2 0.000961939
Camellia sinensis var. sinensis Chr5 2 CH_camsi_732 2 2 0.000275128
Cannabis sativa NC_044373.1 2 CH_cansat_363 2 3 0.000590945
Coffea canephora chr2 2 CH_ccan_246 2 5 0.000127766
Cardamine hirsuta Chr7 2 CH_chi_303 2 2 0.000207361
Carya illinoinensis Chr15 2 CH_cil_487 2 2 0.000371897
Cucumis melo chr06 2 CH_cme_36 4 4 0.00000000000445379
Corchorus olitorius AWUE01015535.1 2 CH_col_77 2 2 0.000292099
Capsella rubella scaffold_7 2 CH_cru_328 2 2 0.000219346
Cucumis sativus L. chr3 2 CH_csa_48 4 4 0.00000000000872629
Daucus carota DCARv2_Chr4 2 CH_dca_104 3 3 0.0000000610156
Erigeron canadensis Conyza_canadensis_scaffold:1 2 CH_eca_173 3 5 0.00000060398
Eucalyptus grandis Chr10 2 CH_egr_783 2 2 0.000175582
Eutrema salsugineum scaffold_1 2 CH_esa_251 2 2 0.00022845
Gossypium hirsutum A01 2 CH_ghi_900 2 2 0.000961256
Gossypium hirsutum D02 2 CH_ghi_901 2 2 0.000961256
Gossypium raimondii Chr05 2 CH_gra_420 2 2 0.000536107
Hydrangea macrophylla Hma1.2p1_0310F.1 2 CH_hma_352 2 2 0.000333259
Lupinus albus Lalb_Chr03 2 CH_lal_432 2 3 0.000944626
Magnolia biondii Chr06 2 CH_mbi_195 3 7 0.000000495247
Malus domestica Chr01 2 CH_mdo_562 2 2 0.000227527
Olea europaea chr18 2 CH_oeu_245 2 2 0.000160137
Petunia axillaris Peaxi162Scf00069 2 CH_pax_253 2 2 0.000211067
Punica granatum NC_045134.1 2 CH_pgr_113 3 4 0.000000135125
Pisum sativum chr1LG6 2 CH_psa_336 2 2 0.000312981
Pisum sativum chr3LG5 2 CH_psa_430 2 3 0.000938886
Rhododendron simsii chr09 2 CH_rsi_438 2 2 0.000193592
Salvia bowleyana GWHASIU00000003 2 CH_sbo_39 5 8 0.0000000000000107988
Sechium edule LG12 2 CH_sed_257 2 2 0.000214026
Sequoiadendron giganteum chr2 2 CH_sgi_186 5 12 0.0000000000000334527
Schrenkiella parvula ch7-4 2 CH_spa_74 3 3 0.0000000371957
Theobroma cacao Chromosome_4 2 CH_tca_350 2 2 0.000219716
Tarenaya hassleriana NW_010966881.1 2 CH_tha_125 3 17 0.000173832
Tripterygium wilfordii NC_052252.1 2 CH_twi_251 2 2 0.000334504

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001