Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.lipid degradation.fatty acid degradation.alpha-oxidation.alpha dioxygenase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 1 CH_arhy_506 2 2 0.00017963
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 1 CH_arhy_507 2 2 0.00017963
Camellia sinensis var. sinensis Chr1 1 CH_camsi_189 3 3 0.00000000315406
Capsicum annuum PGAv.1.6.scaffold206 1 CH_can_59 4 4 0.000000000025373
Cicer arietinum L. Ca_LG6_v3 1 CH_car_297 2 3 0.000700425
Citrus clementina scaffold_2 1 CH_ccl_394 2 2 0.000246093
Carpinus fangiana Cfa03 1 CH_cfa_306 2 2 0.000227204
Carya illinoinensis Chr04 1 CH_cil_486 2 2 0.000371897
Citrullus lanatus CG_Chr10 1 CH_cla_172 2 2 0.000266134
Cucumis melo chr04 1 CH_cme_240 2 2 0.000200133
Cucumis sativus L. chr3 1 CH_csa_96 3 3 0.0000000418111
Davidia involucrata GWHABJS00000014 1 CH_din_345 2 2 0.000150038
Erigeron canadensis Conyza_canadensis_scaffold:6 1 CH_eca_50 4 6 0.0000000000203287
Glycine max Gm19 1 CH_gma_381 2 2 0.000113867
Gossypium raimondii Chr12 1 CH_gra_307 2 2 0.000160832
Helianthus annuus HanXRQChr14 1 CH_han_165 4 9 0.000000000763221
Helianthus annuus HanXRQChr12 1 CH_han_733 2 2 0.0008115
Lonicera japonica GWHAAZE00000094 1 CH_lonja_93 4 5 0.00000000000322199
Lactuca sativa Lsat_1_v8_lg_2 1 CH_lsa_169 3 4 0.0000000634075
Magnolia biondii Chr16 1 CH_mbi_201 3 6 0.000000707488
Medicago truncatula chr6 1 CH_mtr_232 3 3 0.0000000101287
Nelumbo nucifera chr3 1 CH_nnu_330 2 2 0.000130804
Olea europaea chr7 1 CH_oeu_244 2 2 0.000160137
Pisum sativum chr1LG6 1 CH_psa_362 2 3 0.000469451
Phaseolus vulgaris Chr04 1 CH_pvu_285 2 2 0.0000734727
Quercus lobata CM012294 1 CH_qlo_221 4 6 0.0000000000309638
Sequoiadendron giganteum chr5 1 CH_sgi_873 2 2 0.0000487151
Solanum lycopersicum SL4.0ch02 1 CH_sly_149 3 4 0.000000082678
Solanum pennellii Spenn-ch02 1 CH_spe_130 3 4 0.0000000474804
Solanum tuberosum ST4.03ch02 1 CH_stu_140 3 3 0.0000000157569
Trifolium pratense Tp57577_TGAC_v2_LG2 1 CH_tpr_76 3 3 0.0000000343818
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 2 CH_arhy_506 2 2 0.00017963
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 2 CH_arhy_507 2 2 0.00017963
Camellia sinensis var. sinensis Chr1 2 CH_camsi_189 3 3 0.00000000315406
Capsicum annuum PGAv.1.6.scaffold206 2 CH_can_59 4 4 0.000000000025373
Cicer arietinum L. Ca_LG6_v3 2 CH_car_297 2 3 0.000700425
Citrus clementina scaffold_2 2 CH_ccl_394 2 2 0.000246093
Carpinus fangiana Cfa03 2 CH_cfa_306 2 2 0.000227204
Carya illinoinensis Chr04 2 CH_cil_486 2 2 0.000371897
Citrullus lanatus CG_Chr10 2 CH_cla_172 2 2 0.000266134
Cucumis melo chr04 2 CH_cme_240 2 2 0.000200133
Cucumis sativus L. chr3 2 CH_csa_96 3 3 0.0000000418111
Davidia involucrata GWHABJS00000014 2 CH_din_345 2 2 0.000150038
Erigeron canadensis Conyza_canadensis_scaffold:6 2 CH_eca_50 4 6 0.0000000000203287
Gossypium hirsutum D04 2 CH_ghi_781 2 2 0.000560733
Glycine max Gm19 2 CH_gma_381 2 2 0.000113867
Gossypium raimondii Chr12 2 CH_gra_307 2 2 0.000160832
Helianthus annuus HanXRQChr14 2 CH_han_165 4 9 0.000000000763221
Helianthus annuus HanXRQChr12 2 CH_han_733 2 2 0.0008115
Lonicera japonica GWHAAZE00000094 2 CH_lonja_93 4 5 0.00000000000322199
Lactuca sativa Lsat_1_v8_lg_2 2 CH_lsa_169 3 4 0.0000000634075
Magnolia biondii Chr16 2 CH_mbi_201 3 6 0.000000707488
Nelumbo nucifera chr3 2 CH_nnu_330 2 2 0.000130804
Olea europaea chr7 2 CH_oeu_244 2 2 0.000160137
Pisum sativum chr1LG6 2 CH_psa_362 2 3 0.000469451
Phaseolus vulgaris Chr04 2 CH_pvu_285 2 2 0.0000734727
Quercus lobata CM012294 2 CH_qlo_221 4 6 0.0000000000309638
Sequoiadendron giganteum chr5 2 CH_sgi_873 2 2 0.0000487151
Solanum lycopersicum SL4.0ch02 2 CH_sly_149 3 4 0.000000082678
Solanum pennellii Spenn-ch02 2 CH_spe_130 3 4 0.0000000474804
Solanum tuberosum ST4.03ch02 2 CH_stu_140 3 3 0.0000000157569
Trifolium pratense Tp57577_TGAC_v2_LG2 2 CH_tpr_76 3 3 0.0000000343818

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001