Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.lipid degradation.fatty acid degradation.core beta-oxidation.acyl CoA oxidase (ACX)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB02 1 CH_bca_266 4 20 0.000000193481
Camellia sinensis var. sinensis Chr4 1 CH_camsi_184 5 34 0.00000000231744
Citrus clementina scaffold_6 1 CH_ccl_142 3 3 0.000000100941
Chenopodium quinoa C_Quinoa_Scaffold_3416 1 CH_cqu_553 2 2 0.000710732
Erigeron canadensis Conyza_canadensis_scaffold:4 1 CH_eca_454 2 2 0.000448722
Olea europaea chr23 1 CH_oeu_309 2 2 0.000320273
Oryza sativa ssp. japonica chr06 1 CH_osa_240 3 20 0.0000952518
Phaseolus vulgaris Chr02 1 CH_pvu_416 2 2 0.000440836
Sequoiadendron giganteum chr1 1 CH_sgi_306 4 6 0.0000000000780319
Vigna mungo CM024076.1 1 CH_vmu_128 3 7 0.00000219123
Brassica carinata ChrB02 2 CH_bca_266 4 20 0.000000193481
Camellia sinensis var. sinensis Chr4 2 CH_camsi_184 5 34 0.00000000231744
Citrus clementina scaffold_6 2 CH_ccl_142 3 3 0.000000100941
Chenopodium quinoa C_Quinoa_Scaffold_3416 2 CH_cqu_553 2 2 0.000710732
Erigeron canadensis Conyza_canadensis_scaffold:4 2 CH_eca_454 2 2 0.000448722
Olea europaea chr23 2 CH_oeu_309 2 2 0.000320273
Oryza sativa ssp. japonica chr06 2 CH_osa_240 3 20 0.0000952518
Phaseolus vulgaris Chr02 2 CH_pvu_416 2 2 0.000440836
Sequoiadendron giganteum chr1 2 CH_sgi_306 4 6 0.0000000000780319
Vigna mungo CM024076.1 2 CH_vmu_128 3 7 0.00000219123

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001