Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.lipid degradation.phospholipase activities.phospholipase A1 activities.phospholipase A1 (PC-PLA1)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00038 | 1 | CH_atr_81 | 4 | 9 | 0.000000039755 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 1 | CH_bvu_119 | 3 | 3 | 0.00000226207 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 1 | CH_bvu_132 | 3 | 4 | 0.00000904537 |
| Capsicum annuum | PGAv.1.6.scaffold702 | 1 | CH_can_11 | 11 | 26 | 1.56555e-24 |
| Carpinus fangiana | Cfa01 | 1 | CH_cfa_194 | 3 | 4 | 0.0000392135 |
| Carpinus fangiana | Cfa01 | 1 | CH_cfa_195 | 3 | 4 | 0.0000392135 |
| Cucumis melo | chr01 | 1 | CH_cme_130 | 3 | 5 | 0.0000080076 |
| Corchorus olitorius | AWUE01020808.1 | 1 | CH_col_52 | 3 | 6 | 0.000143063 |
| Corchorus olitorius | AWUE01020841.1 | 1 | CH_col_9 | 5 | 5 | 0.00000000000306019 |
| Carica papaya | supercontig_25 | 1 | CH_cpa_345 | 2 | 2 | 0.000570396 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1829 | 1 | CH_cqu_223 | 4 | 11 | 0.00000156968 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4266 | 1 | CH_cqu_329 | 3 | 5 | 0.000087484 |
| Cucumis sativus L. | chr7 | 1 | CH_csa_157 | 3 | 4 | 0.00000689682 |
| Davidia involucrata | GWHABJS00000013 | 1 | CH_din_110 | 5 | 24 | 0.0000000403139 |
| Durio zibethinus | NW_019167982.1 | 1 | CH_dzi_150 | 3 | 3 | 0.00000367354 |
| Glycine max | Gm18 | 1 | CH_gma_247 | 3 | 3 | 0.00000382712 |
| Glycine max | Gm02 | 1 | CH_gma_294 | 3 | 4 | 0.0000153038 |
| Hydrangea macrophylla | Hma1.2p1_0155F.1 | 1 | CH_hma_69 | 3 | 3 | 0.000000647896 |
| Lotus japonicus | chr1 | 1 | CH_lja_181 | 3 | 3 | 0.00000168747 |
| Lonicera japonica | GWHAAZE00000001 | 1 | CH_lonja_308 | 3 | 4 | 0.0000146283 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 1 | CH_lsa_187 | 4 | 10 | 0.000000155468 |
| Malus domestica | Chr05 | 1 | CH_mdo_152 | 4 | 6 | 0.00000000446456 |
| Manihot esculenta | Chromosome16 | 1 | CH_mes_70 | 5 | 5 | 0.00000000000161696 |
| Nelumbo nucifera | chr1 | 1 | CH_nnu_135 | 3 | 3 | 0.00000232698 |
| Nicotiana tabacum | Nitab4.5_0000681 | 1 | CH_nta_74 | 3 | 4 | 0.0000206523 |
| Petunia axillaris | Peaxi162Scf00223 | 1 | CH_pax_68 | 4 | 5 | 0.0000000252998 |
| Physcomitrium patens | Chr22 | 1 | CH_ppa_40 | 3 | 4 | 0.000000788338 |
| Prunus persica | Pp05 | 1 | CH_ppe_227 | 3 | 3 | 0.00000183639 |
| Papaver somniferum | NC_039365.1 | 1 | CH_pso_234 | 5 | 47 | 0.0000000774151 |
| Quercus lobata | 5 | 1 | CH_qlo_730 | 3 | 9 | 0.0000959316 |
| Rhododendron simsii | chr13 | 1 | CH_rsi_114 | 6 | 52 | 0.000000000469487 |
| Salvia bowleyana | GWHASIU00000005 | 1 | CH_sbo_35 | 6 | 8 | 9.8341e-16 |
| Salix brachista | GWHAAZH00000015 | 1 | CH_sbr_74 | 4 | 4 | 0.00000000178669 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_982 | 3 | 10 | 0.0000704006 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_18 | 12 | 44 | 7.18875e-24 |
| Solanum pennellii | Spenn-ch02 | 1 | CH_spe_14 | 10 | 42 | 2.30059e-20 |
| Solanum pennellii | Spenn-ch05 | 1 | CH_spe_215 | 3 | 3 | 0.00000682558 |
| Solanum tuberosum | ST4.03ch02 | 1 | CH_stu_10 | 13 | 52 | 2.11852e-26 |
| Selenicereus undatus | Scaffold_33678 | 1 | CH_sun_242 | 2 | 2 | 0.000435983 |
| Trochodendron aralioides | group6 | 1 | CH_tar_197 | 3 | 3 | 0.00000523915 |
| Theobroma cacao | Chromosome_6 | 1 | CH_tca_28 | 6 | 6 | 8.80468e-16 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 1 | CH_tpr_127 | 3 | 3 | 0.000000722019 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_136 | 3 | 3 | 0.00000072536 |
| Vigna mungo | CM024070.1 | 1 | CH_vmu_245 | 3 | 8 | 0.000100165 |
| Vitis vinifera | chr10 | 1 | CH_vvi_111 | 4 | 5 | 0.0000000047188 |
| Amborella trichopoda | AmTr_v1.0_scaffold00038 | 2 | CH_atr_81 | 4 | 9 | 0.000000039755 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 2 | CH_bvu_119 | 3 | 3 | 0.00000226207 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 2 | CH_bvu_132 | 3 | 4 | 0.00000904537 |
| Capsicum annuum | PGAv.1.6.scaffold702 | 2 | CH_can_11 | 11 | 26 | 1.56555e-24 |
| Carpinus fangiana | Cfa01 | 2 | CH_cfa_194 | 3 | 4 | 0.0000392135 |
| Carpinus fangiana | Cfa01 | 2 | CH_cfa_195 | 3 | 4 | 0.0000392135 |
| Cucumis melo | chr01 | 2 | CH_cme_130 | 3 | 5 | 0.0000080076 |
| Corchorus olitorius | AWUE01020808.1 | 2 | CH_col_52 | 3 | 6 | 0.000143063 |
| Corchorus olitorius | AWUE01020841.1 | 2 | CH_col_9 | 5 | 5 | 0.00000000000306019 |
| Carica papaya | supercontig_25 | 2 | CH_cpa_345 | 2 | 2 | 0.000570396 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1829 | 2 | CH_cqu_223 | 4 | 11 | 0.00000156968 |
| Chenopodium quinoa | C_Quinoa_Scaffold_4266 | 2 | CH_cqu_329 | 3 | 5 | 0.000087484 |
| Cucumis sativus L. | chr7 | 2 | CH_csa_157 | 3 | 4 | 0.00000689682 |
| Davidia involucrata | GWHABJS00000013 | 2 | CH_din_110 | 5 | 24 | 0.0000000403139 |
| Durio zibethinus | NW_019167982.1 | 2 | CH_dzi_150 | 3 | 3 | 0.00000367354 |
| Eucalyptus grandis | Chr05 | 2 | CH_egr_358 | 5 | 18 | 0.00000000643249 |
| Glycine max | Gm18 | 2 | CH_gma_247 | 3 | 3 | 0.00000382712 |
| Glycine max | Gm02 | 2 | CH_gma_294 | 3 | 4 | 0.0000153038 |
| Hydrangea macrophylla | Hma1.2p1_0155F.1 | 2 | CH_hma_69 | 3 | 3 | 0.000000647896 |
| Lotus japonicus | chr1 | 2 | CH_lja_181 | 3 | 3 | 0.00000168747 |
| Lonicera japonica | GWHAAZE00000001 | 2 | CH_lonja_308 | 3 | 4 | 0.0000146283 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 2 | CH_lsa_187 | 4 | 10 | 0.000000155468 |
| Malus domestica | Chr05 | 2 | CH_mdo_152 | 4 | 6 | 0.00000000446456 |
| Manihot esculenta | Chromosome16 | 2 | CH_mes_70 | 5 | 5 | 0.00000000000161696 |
| Nelumbo nucifera | chr1 | 2 | CH_nnu_135 | 3 | 3 | 0.00000232698 |
| Nicotiana tabacum | Nitab4.5_0000681 | 2 | CH_nta_74 | 3 | 4 | 0.0000206523 |
| Petunia axillaris | Peaxi162Scf00223 | 2 | CH_pax_68 | 4 | 5 | 0.0000000252998 |
| Physcomitrium patens | Chr22 | 2 | CH_ppa_40 | 3 | 4 | 0.000000788338 |
| Prunus persica | Pp05 | 2 | CH_ppe_227 | 3 | 3 | 0.00000183639 |
| Papaver somniferum | NC_039365.1 | 2 | CH_pso_234 | 5 | 47 | 0.0000000774151 |
| Quercus lobata | 5 | 2 | CH_qlo_730 | 3 | 9 | 0.0000959316 |
| Rhododendron simsii | chr13 | 2 | CH_rsi_114 | 6 | 52 | 0.000000000469487 |
| Salvia bowleyana | GWHASIU00000005 | 2 | CH_sbo_35 | 6 | 8 | 9.8341e-16 |
| Salix brachista | GWHAAZH00000015 | 2 | CH_sbr_74 | 4 | 4 | 0.00000000178669 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_982 | 3 | 10 | 0.0000704006 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_18 | 12 | 44 | 7.18875e-24 |
| Solanum pennellii | Spenn-ch02 | 2 | CH_spe_14 | 10 | 42 | 2.30059e-20 |
| Solanum pennellii | Spenn-ch05 | 2 | CH_spe_215 | 3 | 3 | 0.00000682558 |
| Solanum tuberosum | ST4.03ch02 | 2 | CH_stu_10 | 13 | 52 | 2.11852e-26 |
| Selenicereus undatus | Scaffold_33678 | 2 | CH_sun_242 | 2 | 2 | 0.000435983 |
| Trochodendron aralioides | group6 | 2 | CH_tar_197 | 3 | 3 | 0.00000523915 |
| Theobroma cacao | Chromosome_6 | 2 | CH_tca_28 | 6 | 6 | 8.80468e-16 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 2 | CH_tpr_127 | 3 | 3 | 0.000000722019 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_136 | 3 | 3 | 0.00000072536 |
| Vigna mungo | CM024070.1 | 2 | CH_vmu_245 | 3 | 8 | 0.000100165 |
| Vitis vinifera | chr10 | 2 | CH_vvi_111 | 4 | 5 | 0.0000000047188 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |