Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.phytosterol biosynthesis.phytosterol C4-demethylation complex.sterone ketoreductase component SKR

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr2 1 CH_acertr_22 6 34 0.000000000000050693
Actinidia chinensis Lachesis_group15 1 CH_ach_155 2 2 0.000162964
Amaranthus hybridus AmaHy_arrow1_Scaffold_13 1 CH_amhyb_27 3 3 0.0000000106286
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 1 CH_arhy_199 3 3 0.0000000268895
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 1 CH_arhy_269 3 6 0.000000537712
Arabidopsis thaliana Chr3 1 CH_ath_392 2 3 0.000515668
Brassica napus BNapus_Darmor_BZH_scaffold_78 1 CH_bna_355 3 9 0.00000826487
Brassica napus A01 1 CH_bna_381 3 9 0.0000123963
Beta vulgaris Chr3_EL10_PGA_scaffold7 1 CH_bvu_220 2 3 0.000248365
Camellia sinensis var. sinensis Chr4 1 CH_camsi_417 3 11 0.00000520181
Cannabis sativa NC_044376.1 1 CH_cansat_102 3 4 0.0000000258707
Capsicum annuum PGAv.1.6.scaffold628 1 CH_can_436 2 3 0.000743443
Cicer arietinum L. Ca_LG3_v3 1 CH_car_236 2 2 0.00023349
Coffea canephora chr6 1 CH_ccan_189 2 2 0.00003833
Citrus clementina scaffold_3 1 CH_ccl_54 4 4 0.00000000000165619
Corchorus olitorius AWUE01015209.1 1 CH_col_25 3 3 0.000000128001
Chenopodium quinoa C_Quinoa_Scaffold_3796 1 CH_cqu_94 4 8 0.000000000781668
Cucumis sativus L. chr3 1 CH_csa_275 2 2 0.000250428
Durio zibethinus NW_019168481.1 1 CH_dzi_12 5 5 3.46161e-17
Erigeron canadensis Conyza_canadensis_scaffold:1 1 CH_eca_88 3 3 0.00000000302034
Eucalyptus grandis Chr11 1 CH_egr_111 6 7 3.02921e-18
Gossypium raimondii Chr07 1 CH_gra_258 2 2 0.0000536107
Helianthus annuus HanXRQChr02 1 CH_han_522 2 2 0.000115929
Lactuca sativa Lsat_1_v8_lg_6 1 CH_lsa_343 2 2 0.0000514007
Medicago truncatula chr7 1 CH_mtr_629 2 2 0.000123259
Punica granatum NC_045128.1 1 CH_pgr_114 3 4 0.000000135125
Prunus persica Pp08 1 CH_ppe_352 2 2 0.0000745962
Populus trichocarpa Chr13 1 CH_ptr_451 2 2 0.000346801
Populus trichocarpa Chr19 1 CH_ptr_452 2 2 0.000346801
Quercus lobata 7 1 CH_qlo_382 3 5 0.0000000399821
Rhododendron simsii chr03 1 CH_rsi_454 2 2 0.000193592
Simmondsia chinensis GWHAASQ00000006 1 CH_sci_14 5 7 0.0000000000000496664
Sequoiadendron giganteum chr3 1 CH_sgi_54 8 12 1.01565e-25
Solanum lycopersicum SL4.0ch06 1 CH_sly_431 2 2 0.000176082
Solanum pennellii Spenn-ch06 1 CH_spe_378 2 2 0.000133437
Solanum tuberosum ST4.03ch06 1 CH_stu_393 2 2 0.0000512453
Theobroma cacao Chromosome_5 1 CH_tca_300 2 2 0.0000732386
Trifolium pratense Tp57577_TGAC_v2_scaf_186 1 CH_tpr_399 2 3 0.000681233
Vaccinium macrocarpon scaffold00267_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_272 2 2 0.0000929238
Acer truncatum chr2 2 CH_acertr_22 6 34 0.000000000000050693
Actinidia chinensis Lachesis_group15 2 CH_ach_155 2 2 0.000162964
Amaranthus hybridus AmaHy_arrow1_Scaffold_13 2 CH_amhyb_27 3 3 0.0000000106286
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 2 CH_arhy_199 3 3 0.0000000268895
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 2 CH_arhy_269 3 6 0.000000537712
Arabidopsis thaliana Chr3 2 CH_ath_392 2 3 0.000515668
Beta vulgaris Chr3_EL10_PGA_scaffold7 2 CH_bvu_220 2 3 0.000248365
Camellia sinensis var. sinensis Chr4 2 CH_camsi_417 3 11 0.00000520181
Cannabis sativa NC_044376.1 2 CH_cansat_102 3 4 0.0000000258707
Capsicum annuum PGAv.1.6.scaffold628 2 CH_can_436 2 3 0.000743443
Cicer arietinum L. Ca_LG3_v3 2 CH_car_236 2 2 0.00023349
Coffea canephora chr6 2 CH_ccan_189 2 2 0.00003833
Citrus clementina scaffold_3 2 CH_ccl_54 4 4 0.00000000000165619
Corchorus olitorius AWUE01015209.1 2 CH_col_25 3 3 0.000000128001
Chenopodium quinoa C_Quinoa_Scaffold_3796 2 CH_cqu_94 4 8 0.000000000781668
Cucumis sativus L. chr3 2 CH_csa_275 2 2 0.000250428
Durio zibethinus NW_019168481.1 2 CH_dzi_12 5 5 3.46161e-17
Erigeron canadensis Conyza_canadensis_scaffold:1 2 CH_eca_88 3 3 0.00000000302034
Eucalyptus grandis Chr11 2 CH_egr_111 6 7 3.02921e-18
Gossypium hirsutum A11 2 CH_ghi_504 2 2 0.0000801047
Gossypium raimondii Chr07 2 CH_gra_258 2 2 0.0000536107
Helianthus annuus HanXRQChr02 2 CH_han_522 2 2 0.000115929
Lactuca sativa Lsat_1_v8_lg_6 2 CH_lsa_343 2 2 0.0000514007
Punica granatum NC_045128.1 2 CH_pgr_114 3 4 0.000000135125
Prunus persica Pp08 2 CH_ppe_352 2 2 0.0000745962
Populus trichocarpa Chr13 2 CH_ptr_451 2 2 0.000346801
Populus trichocarpa Chr19 2 CH_ptr_452 2 2 0.000346801
Quercus lobata 7 2 CH_qlo_382 3 5 0.0000000399821
Rhododendron simsii chr03 2 CH_rsi_454 2 2 0.000193592
Simmondsia chinensis GWHAASQ00000006 2 CH_sci_14 5 7 0.0000000000000496664
Sequoiadendron giganteum chr3 2 CH_sgi_54 8 12 1.01565e-25
Solanum lycopersicum SL4.0ch06 2 CH_sly_431 2 2 0.000176082
Solanum pennellii Spenn-ch06 2 CH_spe_378 2 2 0.000133437
Solanum tuberosum ST4.03ch06 2 CH_stu_393 2 2 0.0000512453
Theobroma cacao Chromosome_5 2 CH_tca_300 2 2 0.0000732386
Trifolium pratense Tp57577_TGAC_v2_scaf_186 2 CH_tpr_399 2 3 0.000681233
Vaccinium macrocarpon scaffold00267_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_272 2 2 0.0000929238

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001