Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.phytosterol biosynthesis.phytosterol C4-demethylation complex.methylsterol monooxygenase component SMO1

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-6 1 CH_aar_13 6 8 2.78812e-17
Arabidopsis lyrata scaffold_7 1 CH_aly_326 2 2 0.000198013
Arabidopsis thaliana Chr4 1 CH_ath_385 2 4 0.000515661
Brassica carinata Contig421 1 CH_bca_871 2 2 0.000320646
Brassica oleracea C1 1 CH_bol_333 2 3 0.000294167
Cannabis sativa NC_044374.1 1 CH_cansat_282 2 3 0.000196986
Corylus avellana 4 1 CH_cav_280 2 2 0.0000766695
Ceratophyllum demersum 10 1 CH_cde_40 3 4 0.000000374244
Carpinus fangiana Cfa05 1 CH_cfa_243 2 2 0.0000757346
Cardamine hirsuta Chr7 1 CH_chi_315 2 2 0.000207361
Citrullus lanatus CG_Chr10 1 CH_cla_138 2 2 0.0000887115
Corchorus olitorius AWUE01014929.1 1 CH_col_94 2 2 0.000292099
Chenopodium quinoa C_Quinoa_Scaffold_1776 1 CH_cqu_453 2 2 0.000284293
Capsella rubella scaffold_7 1 CH_cru_119 3 3 0.0000000320764
Eutrema salsugineum scaffold_1 1 CH_esa_261 2 2 0.00022845
Helianthus annuus HanXRQChr06 1 CH_han_138 4 9 0.000000000109048
Punica granatum NC_045131.1 1 CH_pgr_159 3 8 0.00000472745
Pisum sativum chr3LG5 1 CH_psa_425 2 4 0.000938861
Papaver somniferum NC_039365.1 1 CH_pso_523 2 3 0.000202706
Schrenkiella parvula ch7-4 1 CH_spa_232 2 2 0.000236202
Selenicereus undatus Scaffold_33677 1 CH_sun_8 4 4 0.00000000000575564
Theobroma cacao Chromosome_1 1 CH_tca_445 2 2 0.000732386
Aethionema arabicum LG-6 2 CH_aar_13 6 8 2.78812e-17
Arabidopsis lyrata scaffold_7 2 CH_aly_326 2 2 0.000198013
Arabidopsis thaliana Chr4 2 CH_ath_385 2 4 0.000515661
Brassica carinata Contig421 2 CH_bca_871 2 2 0.000320646
Brassica oleracea C1 2 CH_bol_333 2 3 0.000294167
Cannabis sativa NC_044374.1 2 CH_cansat_282 2 3 0.000196986
Corylus avellana 4 2 CH_cav_280 2 2 0.0000766695
Ceratophyllum demersum 10 2 CH_cde_40 3 4 0.000000374244
Carpinus fangiana Cfa05 2 CH_cfa_243 2 2 0.0000757346
Cardamine hirsuta Chr7 2 CH_chi_315 2 2 0.000207361
Citrullus lanatus CG_Chr10 2 CH_cla_138 2 2 0.0000887115
Corchorus olitorius AWUE01014929.1 2 CH_col_94 2 2 0.000292099
Chenopodium quinoa C_Quinoa_Scaffold_1776 2 CH_cqu_453 2 2 0.000284293
Capsella rubella scaffold_7 2 CH_cru_119 3 3 0.0000000320764
Eutrema salsugineum scaffold_1 2 CH_esa_261 2 2 0.00022845
Gossypium hirsutum D12 2 CH_ghi_914 2 2 0.000961256
Helianthus annuus HanXRQChr06 2 CH_han_138 4 9 0.000000000109048
Punica granatum NC_045131.1 2 CH_pgr_159 3 8 0.00000472745
Pisum sativum chr3LG5 2 CH_psa_425 2 4 0.000938861
Papaver somniferum NC_039365.1 2 CH_pso_523 2 3 0.000202706
Schrenkiella parvula ch7-4 2 CH_spa_232 2 2 0.000236202
Selenicereus undatus Scaffold_33677 2 CH_sun_8 4 4 0.00000000000575564
Theobroma cacao Chromosome_1 2 CH_tca_445 2 2 0.000732386

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001