Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.phytosterol biosynthesis.plant sterol pathway.sterol C-22 desaturase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_4 1 CH_aly_325 2 2 0.000198013
Arabidopsis thaliana Chr2 1 CH_ath_390 2 3 0.000515668
Arabidopsis thaliana Chr2 1 CH_ath_391 2 3 0.000515668
Brassica carinata ChrB06 1 CH_bca_720 2 2 0.000128259
Brassica rapa A04 1 CH_bra_241 2 2 0.000128794
Cardamine hirsuta Chr4 1 CH_chi_314 2 2 0.000207361
Capsella rubella scaffold_4 1 CH_cru_338 2 2 0.000219346
Eutrema salsugineum scaffold_10 1 CH_esa_192 2 2 0.0000761499
Gossypium raimondii Chr10 1 CH_gra_373 2 2 0.000321664
Gossypium raimondii Chr09 1 CH_gra_461 2 3 0.000964932
Lupinus albus Lalb_Chr18 1 CH_lal_279 2 2 0.000157447
Oryza sativa ssp. japonica chr01 1 CH_osa_29 4 5 0.00000000000220962
Arabidopsis lyrata scaffold_4 2 CH_aly_325 2 2 0.000198013
Arabidopsis thaliana Chr2 2 CH_ath_390 2 3 0.000515668
Arabidopsis thaliana Chr2 2 CH_ath_391 2 3 0.000515668
Brassica carinata ChrB06 2 CH_bca_720 2 2 0.000128259
Brassica rapa A04 2 CH_bra_241 2 2 0.000128794
Cardamine hirsuta Chr4 2 CH_chi_314 2 2 0.000207361
Capsella rubella scaffold_4 2 CH_cru_338 2 2 0.000219346
Eutrema salsugineum scaffold_10 2 CH_esa_192 2 2 0.0000761499
Gossypium hirsutum A05 2 CH_ghi_720 2 2 0.000400523
Gossypium hirsutum D05 2 CH_ghi_721 2 2 0.000400523
Gossypium raimondii Chr10 2 CH_gra_373 2 2 0.000321664
Gossypium raimondii Chr09 2 CH_gra_461 2 3 0.000964932
Lupinus albus Lalb_Chr18 2 CH_lal_279 2 2 0.000157447
Lotus japonicus chr6 2 CH_lja_281 2 2 0.0000715077
Oryza sativa ssp. japonica chr01 2 CH_osa_29 4 5 0.00000000000220962

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001