Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.phytosterol biosynthesis.plant sterol pathway.sterol delta8-delta7 isomerase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrB03 1 CH_bca_394 4 75 0.00000248537
Beta vulgaris Chr8_EL10_PGA_scaffold4 1 CH_bvu_11 6 11 4.04436e-17
Citrus clementina scaffold_8 1 CH_ccl_456 2 2 0.000492187
Carpinus fangiana Cfa08 1 CH_cfa_317 2 2 0.000227204
Glycine max Gm09 1 CH_gma_123 3 3 0.00000000864398
Olea europaea chr20 1 CH_oeu_140 3 19 0.0000413716
Punica granatum NC_045132.1 1 CH_pgr_225 2 2 0.0000750356
Sequoiadendron giganteum chr6 1 CH_sgi_934 2 2 0.0000487151
Trifolium pratense Tp57577_TGAC_v2_LG7 1 CH_tpr_286 2 3 0.000227083
Brassica carinata ChrB03 2 CH_bca_394 4 75 0.00000248537
Beta vulgaris Chr8_EL10_PGA_scaffold4 2 CH_bvu_11 6 11 4.04436e-17
Citrus clementina scaffold_8 2 CH_ccl_456 2 2 0.000492187
Carpinus fangiana Cfa08 2 CH_cfa_317 2 2 0.000227204
Glycine max Gm09 2 CH_gma_123 3 3 0.00000000864398
Olea europaea chr20 2 CH_oeu_140 3 19 0.0000413716
Punica granatum NC_045132.1 2 CH_pgr_225 2 2 0.0000750356
Sequoiadendron giganteum chr6 2 CH_sgi_934 2 2 0.0000487151
Trifolium pratense Tp57577_TGAC_v2_LG7 2 CH_tpr_286 2 3 0.000227083

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001