Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.phytosterol biosynthesis.plant sterol pathway.sterol C-24 methyltransferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-7 1 CH_aar_276 2 2 0.000912326
Amborella trichopoda AmTr_v1.0_scaffold00103 1 CH_atr_80 3 3 0.0000000378665
Brassica oleracea C5 1 CH_bol_282 2 2 0.0000980584
Brassica rapa A06 1 CH_bra_282 2 2 0.000257588
Daucus carota DCARv2_Chr6 1 CH_dca_79 3 3 0.00000000610156
Glycine max Gm12 1 CH_gma_567 2 2 0.000569336
Hydrangea macrophylla Hma1.2p1_1598F.1 1 CH_hma_2 10 13 3.45157e-28
Olea europaea chr15 1 CH_oeu_262 2 2 0.000160137
Phaseolus vulgaris Chr11 1 CH_pvu_426 2 2 0.000440836
Rhododendron simsii chr07 1 CH_rsi_199 3 3 0.000000218628
Sequoiadendron giganteum chr6 1 CH_sgi_532 3 5 0.000000142381
Theobroma cacao Chromosome_1 1 CH_tca_149 3 3 0.0000000804614
Zea mays 5 1 CH_zma_298 2 3 0.000920308
Aethionema arabicum LG-7 2 CH_aar_276 2 2 0.000912326
Amborella trichopoda AmTr_v1.0_scaffold00103 2 CH_atr_80 3 3 0.0000000378665
Brassica oleracea C5 2 CH_bol_282 2 2 0.0000980584
Brassica rapa A06 2 CH_bra_282 2 2 0.000257588
Daucus carota DCARv2_Chr6 2 CH_dca_79 3 3 0.00000000610156
Eucalyptus grandis Chr07 2 CH_egr_436 4 44 0.0000000815591
Glycine max Gm12 2 CH_gma_567 2 2 0.000569336
Hydrangea macrophylla Hma1.2p1_1598F.1 2 CH_hma_2 10 13 3.45157e-28
Olea europaea chr15 2 CH_oeu_262 2 2 0.000160137
Phaseolus vulgaris Chr11 2 CH_pvu_426 2 2 0.000440836
Rhododendron simsii chr07 2 CH_rsi_199 3 3 0.000000218628
Sequoiadendron giganteum chr6 2 CH_sgi_532 3 5 0.000000142381
Theobroma cacao Chromosome_1 2 CH_tca_149 3 3 0.0000000804614
Zea mays 5 2 CH_zma_298 2 3 0.000920308

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001