Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.phytosterol biosynthesis.plant sterol pathway
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrC05 | 1 | CH_bca_174 | 6 | 41 | 0.000000010209 |
| Sapria himalayana | scaffold6_19132642 | 1 | CH_shi_222 | 3 | 30 | 0.000694786 |
| Brassica carinata | ChrC05 | 2 | CH_bca_174 | 6 | 41 | 0.000000010209 |
| Sapria himalayana | scaffold6_19132642 | 2 | CH_shi_222 | 3 | 30 | 0.000694786 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 5.5.1.1 | Lipid metabolism.phytosterol biosynthesis.plant sterol pathway.sterol C-24 methyltransferase | 27 |
| 5.5.1.2 | Lipid metabolism.phytosterol biosynthesis.plant sterol pathway.obtusifoliol 14-alpha demethylase | 22 |
| 5.5.1.4 | Lipid metabolism.phytosterol biosynthesis.plant sterol pathway.sterol delta8-delta7 isomerase | 18 |
| 5.5.1.5 | Lipid metabolism.phytosterol biosynthesis.plant sterol pathway.delta7-sterol C-5 desaturase | 36 |
| 5.5.1.6 | Lipid metabolism.phytosterol biosynthesis.plant sterol pathway.sterol delta7 reductase | 2 |
| 5.5.1.7 | Lipid metabolism.phytosterol biosynthesis.plant sterol pathway.sterol delta24 reductase | 3 |
| 5.5.1.8 | Lipid metabolism.phytosterol biosynthesis.plant sterol pathway.cyclopropylsterol isomerase (CPI) | 4 |
| 5.5.1.9 | Lipid metabolism.phytosterol biosynthesis.plant sterol pathway.sterol C-22 desaturase | 27 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |