Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.sphingolipid biosynthesis.sphingobase hydroxylase (SBH)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC08 1 CH_bca_1109 2 2 0.000769551
Brassica oleracea C6 1 CH_bol_362 2 2 0.000326861
Corchorus olitorius AWUE01018143.1 1 CH_col_108 2 3 0.000876168
Carica papaya supercontig_26 1 CH_cpa_375 2 3 0.000855527
Durio zibethinus NW_019167971.1 1 CH_dzi_1 10 13 5.72568e-31
Gossypium hirsutum D02 1 CH_ghi_116 4 4 0.0000000000282718
Gossypium hirsutum A03 1 CH_ghi_133 4 5 0.000000000141345
Gossypium raimondii Chr05 1 CH_gra_72 4 5 0.000000000034669
Helianthus annuus HanXRQChr11 1 CH_han_530 2 2 0.000115929
Magnolia biondii Chr02 1 CH_mbi_538 2 2 0.000291397
Medicago truncatula chr1 1 CH_mtr_638 2 2 0.000123259
Populus trichocarpa Chr05 1 CH_ptr_396 2 2 0.0001734
Quercus lobata CM012294 1 CH_qlo_925 3 55 0.000418609
Rhododendron simsii chr11 1 CH_rsi_201 3 5 0.000000249833
Simmondsia chinensis GWHAASQ00000011 1 CH_sci_58 3 3 0.000000108744
Solanum tuberosum ST4.03ch05 1 CH_stu_102 4 8 0.000000000423828
Theobroma cacao Chromosome_2 1 CH_tca_42 5 7 0.0000000000000951636
Vanilla planifolia CM028157.1 1 CH_vpl_30 3 3 0.00000000818945
Brassica carinata ChrC08 2 CH_bca_1109 2 2 0.000769551
Brassica oleracea C6 2 CH_bol_362 2 2 0.000326861
Corchorus olitorius AWUE01018143.1 2 CH_col_108 2 3 0.000876168
Carica papaya supercontig_26 2 CH_cpa_375 2 3 0.000855527
Durio zibethinus NW_019167971.1 2 CH_dzi_1 10 13 5.72568e-31
Gossypium hirsutum D02 2 CH_ghi_116 4 4 0.0000000000282718
Gossypium hirsutum A03 2 CH_ghi_133 4 5 0.000000000141345
Gossypium raimondii Chr05 2 CH_gra_72 4 5 0.000000000034669
Helianthus annuus HanXRQChr11 2 CH_han_530 2 2 0.000115929
Magnolia biondii Chr02 2 CH_mbi_538 2 2 0.000291397
Populus trichocarpa Chr05 2 CH_ptr_396 2 2 0.0001734
Quercus lobata CM012294 2 CH_qlo_925 3 55 0.000418609
Rhododendron simsii chr11 2 CH_rsi_201 3 5 0.000000249833
Simmondsia chinensis GWHAASQ00000011 2 CH_sci_58 3 3 0.000000108744
Solanum tuberosum ST4.03ch05 2 CH_stu_102 4 8 0.000000000423828
Theobroma cacao Chromosome_2 2 CH_tca_42 5 7 0.0000000000000951636
Vanilla planifolia CM028157.1 2 CH_vpl_30 3 3 0.00000000818945

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001