Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.galactolipid and sulfolipid biosynthesis.phosphatidate phosphatase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC02 1 CH_bca_1022 2 2 0.00059854
Coffea canephora chr10 1 CH_ccan_263 2 6 0.000191648
Citrus clementina scaffold_6 1 CH_ccl_413 2 2 0.000246093
Ceratophyllum demersum 7 1 CH_cde_292 2 2 0.000789796
Ceratophyllum demersum 8 1 CH_cde_293 2 2 0.000789796
Davidia involucrata GWHABJS00000015 1 CH_din_478 2 2 0.000500125
Manihot esculenta Chromosome05 1 CH_mes_381 2 2 0.000183189
Nicotiana tabacum Nitab4.5_0000686 1 CH_nta_173 2 2 0.000658364
Oryza sativa ssp. japonica chr05 1 CH_osa_331 2 2 0.000316874
Physcomitrium patens Chr11 1 CH_ppa_194 2 2 0.000183818
Simmondsia chinensis GWHAASQ00000020 1 CH_sci_236 2 2 0.000255428
Sequoiadendron giganteum chr7 1 CH_sgi_1383 2 2 0.000730727
Sequoiadendron giganteum chr4 1 CH_sgi_515 3 3 0.0000000711967
Solanum lycopersicum SL4.0ch04 1 CH_sly_489 2 2 0.000352164
Solanum pennellii Spenn-ch04 1 CH_spe_447 2 2 0.000266874
Solanum tuberosum ST4.03ch04 1 CH_stu_575 2 2 0.000512453
Vanilla planifolia CM028159.1 1 CH_vpl_275 2 2 0.000221664
Vitis vinifera chr8 1 CH_vvi_362 2 2 0.000228189
Brassica carinata ChrC02 2 CH_bca_1022 2 2 0.00059854
Coffea canephora chr10 2 CH_ccan_263 2 6 0.000191648
Citrus clementina scaffold_6 2 CH_ccl_413 2 2 0.000246093
Ceratophyllum demersum 7 2 CH_cde_292 2 2 0.000789796
Ceratophyllum demersum 8 2 CH_cde_293 2 2 0.000789796
Davidia involucrata GWHABJS00000015 2 CH_din_478 2 2 0.000500125
Manihot esculenta Chromosome05 2 CH_mes_381 2 2 0.000183189
Nicotiana tabacum Nitab4.5_0000686 2 CH_nta_173 2 2 0.000658364
Oryza sativa ssp. japonica chr05 2 CH_osa_331 2 2 0.000316874
Physcomitrium patens Chr11 2 CH_ppa_194 2 2 0.000183818
Simmondsia chinensis GWHAASQ00000020 2 CH_sci_236 2 2 0.000255428
Sequoiadendron giganteum chr7 2 CH_sgi_1383 2 2 0.000730727
Sequoiadendron giganteum chr4 2 CH_sgi_515 3 3 0.0000000711967
Solanum lycopersicum SL4.0ch04 2 CH_sly_489 2 2 0.000352164
Solanum pennellii Spenn-ch04 2 CH_spe_447 2 2 0.000266874
Solanum tuberosum ST4.03ch04 2 CH_stu_575 2 2 0.000512453
Vanilla planifolia CM028159.1 2 CH_vpl_275 2 2 0.000221664
Vitis vinifera chr8 2 CH_vvi_362 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001