Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.glycerolipid biosynthesis.phosphatidylcholine.choline homeostasis.phosphocholine phosphatase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr1 1 CH_acertr_37 4 4 0.0000000000157678
Aquilegia oxysepala CHR07 1 CH_aox_37 6 27 0.000000000847483
Amborella trichopoda AmTr_v1.0_scaffold00036 1 CH_atr_187 2 2 0.0000794407
Beta vulgaris Chr9_EL10_PGA_scaffold8 1 CH_bvu_90 3 3 0.000000102821
Camellia sinensis var. sinensis Chr15 1 CH_camsi_731 2 2 0.000275128
Camellia sinensis var. sinensis Chr14 1 CH_camsi_934 2 3 0.000825341
Capsicum annuum PGAv.1.6.scaffold1389 1 CH_can_185 3 3 0.00000225218
Capsicum annuum PGAv.1.6.scaffold635 1 CH_can_186 3 3 0.00000225218
Capsicum annuum PGAv.1.6.scaffold900 1 CH_can_86 4 5 0.00000000418527
Corylus avellana 11 1 CH_cav_358 2 2 0.000230008
Citrus clementina scaffold_7 1 CH_ccl_81 4 7 0.000000000289769
Cardamine hirsuta Chr1 1 CH_chi_362 2 2 0.000414723
Citrullus lanatus CG_Chr09 1 CH_cla_39 3 3 0.0000000472204
Cucumis melo chr01 1 CH_cme_239 2 2 0.000200133
Corchorus olitorius AWUE01020765.1 1 CH_col_13 4 4 0.000000000373999
Carica papaya supercontig_131 1 CH_cpa_309 2 2 0.000285198
Daucus carota DCARv2_Chr7 1 CH_dca_363 2 2 0.000382665
Durio zibethinus NW_019168037.1 1 CH_dzi_197 3 10 0.0000463555
Durio zibethinus NW_019167982.1 1 CH_dzi_50 4 5 0.000000000313617
Erigeron canadensis Conyza_canadensis_scaffold:2 1 CH_eca_357 2 2 0.000134617
Erythranthe guttata scaffold_9 1 CH_egut_180 3 4 0.000000318101
Gossypium hirsutum A05 1 CH_ghi_124 4 4 0.0000000000779617
Gossypium hirsutum D05 1 CH_ghi_293 3 3 0.000000486611
Glycine max Gm07 1 CH_gma_177 3 3 0.000000259319
Glycine max Gm08 1 CH_gma_178 3 3 0.000000259319
Gossypium raimondii Chr09 1 CH_gra_68 4 4 0.00000000003236
Lotus japonicus chr3 1 CH_lja_127 3 3 0.000000153406
Lactuca sativa Lsat_1_v8_lg_4 1 CH_lsa_188 3 5 0.000000158512
Medicago truncatula chr8 1 CH_mtr_180 4 6 0.00000000065531
Olea europaea chr18 1 CH_oeu_307 2 2 0.000320273
Prunus persica Pp03 1 CH_ppe_460 2 2 0.000447577
Papaver somniferum NC_039364.1 1 CH_pso_104 4 4 0.00000000000719864
Papaver somniferum NC_039367.1 1 CH_pso_239 3 3 0.0000000913147
Phaseolus vulgaris Chr10 1 CH_pvu_42 5 5 0.0000000000000122419
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_807 2 2 0.00083717
Rhododendron simsii chr05 1 CH_rsi_252 3 8 0.00000349664
Sechium edule LG07 1 CH_sed_300 2 2 0.000428052
Sequoiadendron giganteum chr6 1 CH_sgi_32 9 11 1.36081e-28
Solanum lycopersicum SL4.0ch06 1 CH_sly_155 3 3 0.000000103353
Solanum lycopersicum SL4.0ch03 1 CH_sly_551 2 2 0.000880411
Solanum pennellii Spenn-ch06 1 CH_spe_137 3 3 0.0000000593529
Solanum pennellii Spenn-ch03 1 CH_spe_505 2 2 0.000667186
Solanum tuberosum ST4.03ch06 1 CH_stu_517 2 2 0.000307472
Theobroma cacao Chromosome_6 1 CH_tca_164 4 20 0.000000199474
Tarenaya hassleriana NW_010968263.1 1 CH_tha_6 5 5 0.00000000000000374941
Trifolium pratense Tp57577_TGAC_v2_LG5 1 CH_tpr_5 6 7 3.28904e-17
Tripterygium wilfordii NC_052238.1 1 CH_twi_250 2 2 0.000334504
Vigna mungo CM024078.1 1 CH_vmu_94 3 3 0.000000125253
Vitis vinifera chr9 1 CH_vvi_433 2 2 0.00076063
Acer truncatum chr1 2 CH_acertr_37 4 4 0.0000000000157678
Aquilegia oxysepala CHR07 2 CH_aox_37 6 27 0.000000000847483
Amborella trichopoda AmTr_v1.0_scaffold00036 2 CH_atr_187 2 2 0.0000794407
Beta vulgaris Chr9_EL10_PGA_scaffold8 2 CH_bvu_90 3 3 0.000000102821
Camellia sinensis var. sinensis Chr15 2 CH_camsi_731 2 2 0.000275128
Camellia sinensis var. sinensis Chr14 2 CH_camsi_934 2 3 0.000825341
Capsicum annuum PGAv.1.6.scaffold1389 2 CH_can_185 3 3 0.00000225218
Capsicum annuum PGAv.1.6.scaffold635 2 CH_can_186 3 3 0.00000225218
Capsicum annuum PGAv.1.6.scaffold900 2 CH_can_86 4 5 0.00000000418527
Corylus avellana 11 2 CH_cav_358 2 2 0.000230008
Citrus clementina scaffold_7 2 CH_ccl_81 4 7 0.000000000289769
Cardamine hirsuta Chr1 2 CH_chi_362 2 2 0.000414723
Citrullus lanatus CG_Chr09 2 CH_cla_39 3 3 0.0000000472204
Cucumis melo chr01 2 CH_cme_239 2 2 0.000200133
Corchorus olitorius AWUE01020765.1 2 CH_col_13 4 4 0.000000000373999
Carica papaya supercontig_131 2 CH_cpa_309 2 2 0.000285198
Daucus carota DCARv2_Chr7 2 CH_dca_363 2 2 0.000382665
Durio zibethinus NW_019168037.1 2 CH_dzi_197 3 10 0.0000463555
Durio zibethinus NW_019167982.1 2 CH_dzi_50 4 5 0.000000000313617
Erigeron canadensis Conyza_canadensis_scaffold:2 2 CH_eca_357 2 2 0.000134617
Eucalyptus grandis Chr06 2 CH_egr_837 2 3 0.000351165
Erythranthe guttata scaffold_9 2 CH_egut_180 3 4 0.000000318101
Gossypium hirsutum A05 2 CH_ghi_124 4 4 0.0000000000779617
Gossypium hirsutum D05 2 CH_ghi_293 3 3 0.000000486611
Glycine max Gm07 2 CH_gma_177 3 3 0.000000259319
Glycine max Gm08 2 CH_gma_178 3 3 0.000000259319
Gossypium raimondii Chr09 2 CH_gra_68 4 4 0.00000000003236
Lotus japonicus chr3 2 CH_lja_127 3 3 0.000000153406
Lactuca sativa Lsat_1_v8_lg_4 2 CH_lsa_188 3 5 0.000000158512
Olea europaea chr18 2 CH_oeu_307 2 2 0.000320273
Prunus persica Pp03 2 CH_ppe_460 2 2 0.000447577
Papaver somniferum NC_039364.1 2 CH_pso_104 4 4 0.00000000000719864
Papaver somniferum NC_039367.1 2 CH_pso_239 3 3 0.0000000913147
Phaseolus vulgaris Chr10 2 CH_pvu_42 5 5 0.0000000000000122419
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_807 2 2 0.00083717
Rhododendron simsii chr05 2 CH_rsi_252 3 8 0.00000349664
Sechium edule LG07 2 CH_sed_300 2 2 0.000428052
Sequoiadendron giganteum chr6 2 CH_sgi_32 9 11 1.36081e-28
Solanum lycopersicum SL4.0ch06 2 CH_sly_155 3 3 0.000000103353
Solanum lycopersicum SL4.0ch03 2 CH_sly_551 2 2 0.000880411
Solanum pennellii Spenn-ch06 2 CH_spe_137 3 3 0.0000000593529
Solanum pennellii Spenn-ch03 2 CH_spe_505 2 2 0.000667186
Solanum tuberosum ST4.03ch06 2 CH_stu_517 2 2 0.000307472
Theobroma cacao Chromosome_6 2 CH_tca_164 4 20 0.000000199474
Tarenaya hassleriana NW_010968263.1 2 CH_tha_6 5 5 0.00000000000000374941
Trifolium pratense Tp57577_TGAC_v2_LG5 2 CH_tpr_5 6 7 3.28904e-17
Tripterygium wilfordii NC_052238.1 2 CH_twi_250 2 2 0.000334504
Vigna mungo CM024078.1 2 CH_vmu_94 3 3 0.000000125253
Vitis vinifera chr9 2 CH_vvi_433 2 2 0.00076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001