Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.glycerolipid biosynthesis.diacylglycerol.phosphatidate phosphatase (LPP-alpha)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr11 1 CH_acertr_19 6 23 0.0000000000000276628
Actinidia chinensis Lachesis_group15 1 CH_ach_58 3 4 0.00000212427
Aquilegia oxysepala CHR03 1 CH_aox_239 2 2 0.000240597
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 1 CH_arhy_752 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 1 CH_arhy_753 2 2 0.000838273
Brassica carinata ChrC01 1 CH_bca_296 3 3 0.000000311873
Beta vulgaris Chr6_EL10_PGA_scaffold0 1 CH_bvu_195 2 2 0.0000827917
Camellia sinensis var. sinensis Chr6 1 CH_camsi_405 3 10 0.00000378335
Cannabis sativa NC_044373.1 1 CH_cansat_346 2 2 0.000393985
Capsicum annuum PGAv.1.6.scaffold610 1 CH_can_152 3 3 0.000000358301
Corylus avellana 1 1 CH_cav_371 2 2 0.000230008
Coffea canephora chr11 1 CH_ccan_306 2 6 0.000383294
Citrus clementina scaffold_2 1 CH_ccl_409 2 2 0.000246093
Carya illinoinensis Chr06 1 CH_cil_566 2 2 0.000929742
Carya illinoinensis Chr05 1 CH_cil_567 2 2 0.000929742
Cucumis melo chr10 1 CH_cme_281 2 2 0.000400267
Chenopodium quinoa C_Quinoa_Scaffold_3035 1 CH_cqu_596 2 3 0.000852831
Cucumis sativus L. chr5 1 CH_csa_304 2 2 0.000500856
Fragaria vesca Fvb4 1 CH_fve_355 2 2 0.00017673
Gossypium raimondii Chr09 1 CH_gra_372 2 2 0.000321664
Lonicera japonica GWHAAZE00000006 1 CH_lonja_617 2 2 0.000598874
Manihot esculenta Chromosome14 1 CH_mes_471 2 2 0.000610631
Nelumbo nucifera chr4 1 CH_nnu_416 2 2 0.000436015
Nelumbo nucifera chr3 1 CH_nnu_82 3 3 0.000000028517
Prunus persica Pp01 1 CH_ppe_469 2 2 0.000447577
Populus trichocarpa Chr10 1 CH_ptr_514 2 2 0.000578001
Phaseolus vulgaris Chr07 1 CH_pvu_474 2 2 0.000734727
Quercus lobata 1 1 CH_qlo_387 3 3 0.0000000399842
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_220 3 3 0.00000000953562
Rhododendron simsii chr12 1 CH_rsi_587 2 2 0.000967961
Rhododendron simsii chr09 1 CH_rsi_588 2 2 0.000967961
Salvia bowleyana GWHASIU00000004 1 CH_sbo_456 2 2 0.00068247
Sechium edule LG06 1 CH_sed_345 2 2 0.000713419
Solanum lycopersicum SL4.0ch05 1 CH_sly_167 3 3 0.000000180867
Solanum pennellii Spenn-ch05 1 CH_spe_128 3 3 0.0000000296764
Solanum tuberosum ST4.03ch05 1 CH_stu_171 3 5 0.0000000787843
Solanum tuberosum ST4.03ch04 1 CH_stu_614 2 2 0.000768679
Selenicereus undatus Scaffold_33673 1 CH_sun_145 2 2 0.0000726639
Theobroma cacao Chromosome_2 1 CH_tca_402 2 2 0.000439432
Tripterygium wilfordii NC_052233.1 1 CH_twi_318 2 2 0.00083626
Vitis vinifera chr1 1 CH_vvi_175 3 4 0.000000347115
Acer truncatum chr11 2 CH_acertr_19 6 23 0.0000000000000276628
Actinidia chinensis Lachesis_group15 2 CH_ach_58 3 4 0.00000212427
Aquilegia oxysepala CHR03 2 CH_aox_239 2 2 0.000240597
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 2 CH_arhy_752 2 2 0.000838273
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 2 CH_arhy_753 2 2 0.000838273
Brassica carinata ChrC01 2 CH_bca_296 3 3 0.000000311873
Beta vulgaris Chr6_EL10_PGA_scaffold0 2 CH_bvu_195 2 2 0.0000827917
Camellia sinensis var. sinensis Chr6 2 CH_camsi_405 3 10 0.00000378335
Cannabis sativa NC_044373.1 2 CH_cansat_346 2 2 0.000393985
Capsicum annuum PGAv.1.6.scaffold610 2 CH_can_152 3 3 0.000000358301
Corylus avellana 1 2 CH_cav_371 2 2 0.000230008
Coffea canephora chr11 2 CH_ccan_306 2 6 0.000383294
Citrus clementina scaffold_2 2 CH_ccl_409 2 2 0.000246093
Carya illinoinensis Chr06 2 CH_cil_566 2 2 0.000929742
Carya illinoinensis Chr05 2 CH_cil_567 2 2 0.000929742
Cucumis melo chr10 2 CH_cme_281 2 2 0.000400267
Chenopodium quinoa C_Quinoa_Scaffold_3035 2 CH_cqu_596 2 3 0.000852831
Cucumis sativus L. chr5 2 CH_csa_304 2 2 0.000500856
Eucalyptus grandis Chr02 2 CH_egr_486 3 3 0.000000287747
Fragaria vesca Fvb4 2 CH_fve_355 2 2 0.00017673
Gossypium hirsutum A05 2 CH_ghi_848 2 2 0.000747644
Gossypium hirsutum D05 2 CH_ghi_849 2 2 0.000747644
Gossypium raimondii Chr09 2 CH_gra_372 2 2 0.000321664
Lonicera japonica GWHAAZE00000006 2 CH_lonja_617 2 2 0.000598874
Manihot esculenta Chromosome14 2 CH_mes_471 2 2 0.000610631
Nelumbo nucifera chr4 2 CH_nnu_416 2 2 0.000436015
Nelumbo nucifera chr3 2 CH_nnu_82 3 3 0.000000028517
Prunus persica Pp01 2 CH_ppe_469 2 2 0.000447577
Populus trichocarpa Chr10 2 CH_ptr_514 2 2 0.000578001
Phaseolus vulgaris Chr07 2 CH_pvu_474 2 2 0.000734727
Quercus lobata 1 2 CH_qlo_387 3 3 0.0000000399842
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_220 3 3 0.00000000953562
Rhododendron simsii chr12 2 CH_rsi_587 2 2 0.000967961
Rhododendron simsii chr09 2 CH_rsi_588 2 2 0.000967961
Salvia bowleyana GWHASIU00000004 2 CH_sbo_456 2 2 0.00068247
Sechium edule LG06 2 CH_sed_345 2 2 0.000713419
Solanum lycopersicum SL4.0ch05 2 CH_sly_167 3 3 0.000000180867
Solanum pennellii Spenn-ch05 2 CH_spe_128 3 3 0.0000000296764
Solanum tuberosum ST4.03ch05 2 CH_stu_171 3 5 0.0000000787843
Solanum tuberosum ST4.03ch04 2 CH_stu_614 2 2 0.000768679
Selenicereus undatus Scaffold_33673 2 CH_sun_145 2 2 0.0000726639
Theobroma cacao Chromosome_2 2 CH_tca_402 2 2 0.000439432
Tripterygium wilfordii NC_052233.1 2 CH_twi_318 2 2 0.00083626
Vitis vinifera chr1 2 CH_vvi_175 3 4 0.000000347115

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001