Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.glycerolipid biosynthesis.diacylglycerol.phosphatidate phosphatase (LPP-alpha)
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Acer truncatum | chr11 | 1 | CH_acertr_19 | 6 | 23 | 0.0000000000000276628 |
Actinidia chinensis | Lachesis_group15 | 1 | CH_ach_58 | 3 | 4 | 0.00000212427 |
Aquilegia oxysepala | CHR03 | 1 | CH_aox_239 | 2 | 2 | 0.000240597 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 1 | CH_arhy_752 | 2 | 2 | 0.000838273 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 1 | CH_arhy_753 | 2 | 2 | 0.000838273 |
Brassica carinata | ChrC01 | 1 | CH_bca_296 | 3 | 3 | 0.000000311873 |
Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 1 | CH_bvu_195 | 2 | 2 | 0.0000827917 |
Camellia sinensis var. sinensis | Chr6 | 1 | CH_camsi_405 | 3 | 10 | 0.00000378335 |
Cannabis sativa | NC_044373.1 | 1 | CH_cansat_346 | 2 | 2 | 0.000393985 |
Capsicum annuum | PGAv.1.6.scaffold610 | 1 | CH_can_152 | 3 | 3 | 0.000000358301 |
Corylus avellana | 1 | 1 | CH_cav_371 | 2 | 2 | 0.000230008 |
Coffea canephora | chr11 | 1 | CH_ccan_306 | 2 | 6 | 0.000383294 |
Citrus clementina | scaffold_2 | 1 | CH_ccl_409 | 2 | 2 | 0.000246093 |
Carya illinoinensis | Chr06 | 1 | CH_cil_566 | 2 | 2 | 0.000929742 |
Carya illinoinensis | Chr05 | 1 | CH_cil_567 | 2 | 2 | 0.000929742 |
Cucumis melo | chr10 | 1 | CH_cme_281 | 2 | 2 | 0.000400267 |
Chenopodium quinoa | C_Quinoa_Scaffold_3035 | 1 | CH_cqu_596 | 2 | 3 | 0.000852831 |
Cucumis sativus L. | chr5 | 1 | CH_csa_304 | 2 | 2 | 0.000500856 |
Fragaria vesca | Fvb4 | 1 | CH_fve_355 | 2 | 2 | 0.00017673 |
Gossypium raimondii | Chr09 | 1 | CH_gra_372 | 2 | 2 | 0.000321664 |
Lonicera japonica | GWHAAZE00000006 | 1 | CH_lonja_617 | 2 | 2 | 0.000598874 |
Manihot esculenta | Chromosome14 | 1 | CH_mes_471 | 2 | 2 | 0.000610631 |
Nelumbo nucifera | chr4 | 1 | CH_nnu_416 | 2 | 2 | 0.000436015 |
Nelumbo nucifera | chr3 | 1 | CH_nnu_82 | 3 | 3 | 0.000000028517 |
Prunus persica | Pp01 | 1 | CH_ppe_469 | 2 | 2 | 0.000447577 |
Populus trichocarpa | Chr10 | 1 | CH_ptr_514 | 2 | 2 | 0.000578001 |
Phaseolus vulgaris | Chr07 | 1 | CH_pvu_474 | 2 | 2 | 0.000734727 |
Quercus lobata | 1 | 1 | CH_qlo_387 | 3 | 3 | 0.0000000399842 |
Rosa chinensis | RcHm_v2.0_Chr4 | 1 | CH_rch_220 | 3 | 3 | 0.00000000953562 |
Rhododendron simsii | chr12 | 1 | CH_rsi_587 | 2 | 2 | 0.000967961 |
Rhododendron simsii | chr09 | 1 | CH_rsi_588 | 2 | 2 | 0.000967961 |
Salvia bowleyana | GWHASIU00000004 | 1 | CH_sbo_456 | 2 | 2 | 0.00068247 |
Sechium edule | LG06 | 1 | CH_sed_345 | 2 | 2 | 0.000713419 |
Solanum lycopersicum | SL4.0ch05 | 1 | CH_sly_167 | 3 | 3 | 0.000000180867 |
Solanum pennellii | Spenn-ch05 | 1 | CH_spe_128 | 3 | 3 | 0.0000000296764 |
Solanum tuberosum | ST4.03ch05 | 1 | CH_stu_171 | 3 | 5 | 0.0000000787843 |
Solanum tuberosum | ST4.03ch04 | 1 | CH_stu_614 | 2 | 2 | 0.000768679 |
Selenicereus undatus | Scaffold_33673 | 1 | CH_sun_145 | 2 | 2 | 0.0000726639 |
Theobroma cacao | Chromosome_2 | 1 | CH_tca_402 | 2 | 2 | 0.000439432 |
Tripterygium wilfordii | NC_052233.1 | 1 | CH_twi_318 | 2 | 2 | 0.00083626 |
Vitis vinifera | chr1 | 1 | CH_vvi_175 | 3 | 4 | 0.000000347115 |
Acer truncatum | chr11 | 2 | CH_acertr_19 | 6 | 23 | 0.0000000000000276628 |
Actinidia chinensis | Lachesis_group15 | 2 | CH_ach_58 | 3 | 4 | 0.00000212427 |
Aquilegia oxysepala | CHR03 | 2 | CH_aox_239 | 2 | 2 | 0.000240597 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.19 | 2 | CH_arhy_752 | 2 | 2 | 0.000838273 |
Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 2 | CH_arhy_753 | 2 | 2 | 0.000838273 |
Brassica carinata | ChrC01 | 2 | CH_bca_296 | 3 | 3 | 0.000000311873 |
Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 2 | CH_bvu_195 | 2 | 2 | 0.0000827917 |
Camellia sinensis var. sinensis | Chr6 | 2 | CH_camsi_405 | 3 | 10 | 0.00000378335 |
Cannabis sativa | NC_044373.1 | 2 | CH_cansat_346 | 2 | 2 | 0.000393985 |
Capsicum annuum | PGAv.1.6.scaffold610 | 2 | CH_can_152 | 3 | 3 | 0.000000358301 |
Corylus avellana | 1 | 2 | CH_cav_371 | 2 | 2 | 0.000230008 |
Coffea canephora | chr11 | 2 | CH_ccan_306 | 2 | 6 | 0.000383294 |
Citrus clementina | scaffold_2 | 2 | CH_ccl_409 | 2 | 2 | 0.000246093 |
Carya illinoinensis | Chr06 | 2 | CH_cil_566 | 2 | 2 | 0.000929742 |
Carya illinoinensis | Chr05 | 2 | CH_cil_567 | 2 | 2 | 0.000929742 |
Cucumis melo | chr10 | 2 | CH_cme_281 | 2 | 2 | 0.000400267 |
Chenopodium quinoa | C_Quinoa_Scaffold_3035 | 2 | CH_cqu_596 | 2 | 3 | 0.000852831 |
Cucumis sativus L. | chr5 | 2 | CH_csa_304 | 2 | 2 | 0.000500856 |
Eucalyptus grandis | Chr02 | 2 | CH_egr_486 | 3 | 3 | 0.000000287747 |
Fragaria vesca | Fvb4 | 2 | CH_fve_355 | 2 | 2 | 0.00017673 |
Gossypium hirsutum | A05 | 2 | CH_ghi_848 | 2 | 2 | 0.000747644 |
Gossypium hirsutum | D05 | 2 | CH_ghi_849 | 2 | 2 | 0.000747644 |
Gossypium raimondii | Chr09 | 2 | CH_gra_372 | 2 | 2 | 0.000321664 |
Lonicera japonica | GWHAAZE00000006 | 2 | CH_lonja_617 | 2 | 2 | 0.000598874 |
Manihot esculenta | Chromosome14 | 2 | CH_mes_471 | 2 | 2 | 0.000610631 |
Nelumbo nucifera | chr4 | 2 | CH_nnu_416 | 2 | 2 | 0.000436015 |
Nelumbo nucifera | chr3 | 2 | CH_nnu_82 | 3 | 3 | 0.000000028517 |
Prunus persica | Pp01 | 2 | CH_ppe_469 | 2 | 2 | 0.000447577 |
Populus trichocarpa | Chr10 | 2 | CH_ptr_514 | 2 | 2 | 0.000578001 |
Phaseolus vulgaris | Chr07 | 2 | CH_pvu_474 | 2 | 2 | 0.000734727 |
Quercus lobata | 1 | 2 | CH_qlo_387 | 3 | 3 | 0.0000000399842 |
Rosa chinensis | RcHm_v2.0_Chr4 | 2 | CH_rch_220 | 3 | 3 | 0.00000000953562 |
Rhododendron simsii | chr12 | 2 | CH_rsi_587 | 2 | 2 | 0.000967961 |
Rhododendron simsii | chr09 | 2 | CH_rsi_588 | 2 | 2 | 0.000967961 |
Salvia bowleyana | GWHASIU00000004 | 2 | CH_sbo_456 | 2 | 2 | 0.00068247 |
Sechium edule | LG06 | 2 | CH_sed_345 | 2 | 2 | 0.000713419 |
Solanum lycopersicum | SL4.0ch05 | 2 | CH_sly_167 | 3 | 3 | 0.000000180867 |
Solanum pennellii | Spenn-ch05 | 2 | CH_spe_128 | 3 | 3 | 0.0000000296764 |
Solanum tuberosum | ST4.03ch05 | 2 | CH_stu_171 | 3 | 5 | 0.0000000787843 |
Solanum tuberosum | ST4.03ch04 | 2 | CH_stu_614 | 2 | 2 | 0.000768679 |
Selenicereus undatus | Scaffold_33673 | 2 | CH_sun_145 | 2 | 2 | 0.0000726639 |
Theobroma cacao | Chromosome_2 | 2 | CH_tca_402 | 2 | 2 | 0.000439432 |
Tripterygium wilfordii | NC_052233.1 | 2 | CH_twi_318 | 2 | 2 | 0.00083626 |
Vitis vinifera | chr1 | 2 | CH_vvi_175 | 3 | 4 | 0.000000347115 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |