Functional clusters
Information
- Type MapMan
- Description Lipid metabolism.fatty acid biosynthesis.fatty acid desaturation.delta-7/delta-9 fatty acid desaturase (FAD5/ADS)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-1 | 1 | CH_aar_120 | 3 | 4 | 0.0000227135 |
| Aethionema arabicum | LG-1 | 1 | CH_aar_6 | 8 | 9 | 9.60336e-22 |
| Actinidia chinensis | Lachesis_group27 | 1 | CH_ach_38 | 3 | 5 | 0.000000177036 |
| Arabidopsis lyrata | scaffold_1 | 1 | CH_aly_67 | 5 | 33 | 0.00000000188619 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_3 | 1 | CH_amhyb_272 | 2 | 2 | 0.000841751 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 1 | CH_amhyb_39 | 3 | 3 | 0.000000106286 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_25 | 6 | 40 | 0.000000000000139945 |
| Brassica carinata | ChrC07 | 1 | CH_bca_212 | 4 | 7 | 0.0000000475285 |
| Brassica carinata | ChrB02 | 1 | CH_bca_306 | 5 | 42 | 0.000000367038 |
| Brassica carinata | ChrC05 | 1 | CH_bca_38 | 7 | 38 | 0.000000000000471505 |
| Brassica carinata | ChrC07 | 1 | CH_bca_427 | 3 | 3 | 0.00000410164 |
| Brassica carinata | ChrC05 | 1 | CH_bca_576 | 3 | 5 | 0.0000409952 |
| Brassica napus | A09 | 1 | CH_bna_128 | 4 | 4 | 0.00000000312572 |
| Brassica napus | C08 | 1 | CH_bna_149 | 5 | 18 | 0.0000000103896 |
| Brassica napus | A03 | 1 | CH_bna_156 | 4 | 6 | 0.0000000156236 |
| Brassica napus | C05 | 1 | CH_bna_219 | 5 | 31 | 0.000000205163 |
| Brassica napus | A05 | 1 | CH_bna_433 | 3 | 4 | 0.0000313365 |
| Brassica napus | C08 | 1 | CH_bna_434 | 3 | 4 | 0.0000313365 |
| Brassica napus | C05 | 1 | CH_bna_481 | 3 | 5 | 0.0000783172 |
| Brassica napus | A10 | 1 | CH_bna_550 | 4 | 37 | 0.000204263 |
| Brassica oleracea | C8 | 1 | CH_bol_194 | 3 | 4 | 0.00000986957 |
| Brassica oleracea | C5 | 1 | CH_bol_212 | 4 | 29 | 0.0000180883 |
| Brassica oleracea | C3 | 1 | CH_bol_222 | 3 | 5 | 0.0000246678 |
| Brassica oleracea | C8 | 1 | CH_bol_66 | 5 | 20 | 0.00000000348261 |
| Brassica rapa | A09 | 1 | CH_bra_169 | 3 | 4 | 0.0000147037 |
| Brassica rapa | A05 | 1 | CH_bra_206 | 3 | 6 | 0.0000734727 |
| Brassica rapa | A10 | 1 | CH_bra_216 | 4 | 38 | 0.000103765 |
| Brassica rapa | A03 | 1 | CH_bra_67 | 4 | 5 | 0.00000000710184 |
| Camellia sinensis var. sinensis | Chr15 | 1 | CH_camsi_711 | 2 | 4 | 0.000275116 |
| Cannabis sativa | NC_044371.1 | 1 | CH_cansat_244 | 2 | 2 | 0.0000656642 |
| Citrullus lanatus | CG_Chr07 | 1 | CH_cla_2 | 9 | 11 | 1.45455e-23 |
| Cucumis melo | chr07 | 1 | CH_cme_5 | 9 | 11 | 1.53143e-25 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3514 | 1 | CH_cqu_449 | 2 | 2 | 0.000284293 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3333 | 1 | CH_cqu_450 | 2 | 2 | 0.000284293 |
| Chlamydomonas reinhardtii | chromosome_4 | 1 | CH_cre_39 | 3 | 22 | 0.000119303 |
| Capsella rubella | scaffold_1 | 1 | CH_cru_152 | 3 | 3 | 0.000000280668 |
| Cucumis sativus L. | chr4 | 1 | CH_csa_11 | 7 | 7 | 2.11162e-20 |
| Cucumis sativus L. | chr1 | 1 | CH_csa_141 | 3 | 3 | 0.00000229961 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 1 | CH_eca_169 | 3 | 3 | 0.000000498357 |
| Eutrema salsugineum | scaffold_5 | 1 | CH_esa_53 | 5 | 27 | 0.00000000113707 |
| Fragaria x ananassa | Fvb6-1 | 1 | CH_fan_270 | 4 | 19 | 0.00000670485 |
| Fragaria x ananassa | Fvb6-3 | 1 | CH_fan_526 | 3 | 9 | 0.000425551 |
| Fragaria x ananassa | Fvb6-4 | 1 | CH_fan_642 | 3 | 11 | 0.000835459 |
| Fragaria vesca | Fvb6 | 1 | CH_fve_91 | 5 | 22 | 0.00000000305019 |
| Helianthus annuus | HanXRQChr04 | 1 | CH_han_319 | 4 | 13 | 0.00000184458 |
| Helianthus annuus | HanXRQChr10 | 1 | CH_han_324 | 4 | 14 | 0.00000258148 |
| Helianthus annuus | HanXRQChr02 | 1 | CH_han_56 | 6 | 9 | 0.0000000000000374625 |
| Lonicera japonica | GWHAAZE00000002 | 1 | CH_lonja_76 | 6 | 20 | 0.00000000000014086 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 1 | CH_lsa_106 | 5 | 12 | 0.000000000354555 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 1 | CH_lsa_217 | 4 | 12 | 0.000000615599 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 1 | CH_lsa_289 | 3 | 4 | 0.0000129316 |
| Olea europaea | chr12 | 1 | CH_oeu_214 | 2 | 3 | 0.000160132 |
| Physcomitrium patens | Chr17 | 1 | CH_ppa_185 | 2 | 2 | 0.000183818 |
| Prunus persica | Pp03 | 1 | CH_ppe_145 | 4 | 4 | 0.00000000603413 |
| Prunus persica | Pp04 | 1 | CH_ppe_32 | 8 | 10 | 2.29494e-20 |
| Prunus persica | Pp04 | 1 | CH_ppe_69 | 6 | 9 | 0.000000000000169029 |
| Papaver somniferum | NC_039363.1 | 1 | CH_pso_185 | 4 | 7 | 0.000000015168 |
| Papaver somniferum | NC_039358.1 | 1 | CH_pso_71 | 5 | 5 | 0.000000000000102555 |
| Populus trichocarpa | Chr11 | 1 | CH_ptr_156 | 3 | 4 | 0.0000000200451 |
| Quercus lobata | 5 | 1 | CH_qlo_210 | 4 | 7 | 0.00000000001445 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 1 | CH_rch_132 | 7 | 26 | 0.0000000000204731 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 1 | CH_rch_275 | 6 | 42 | 0.000000183706 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 1 | CH_rch_502 | 4 | 14 | 0.0000434896 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_630 | 3 | 4 | 0.000186763 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_743 | 3 | 5 | 0.00046657 |
| Salvia bowleyana | GWHASIU00000007 | 1 | CH_sbo_345 | 2 | 2 | 0.000136494 |
| Salix brachista | GWHAAZH00000011 | 1 | CH_sbr_114 | 3 | 5 | 0.000000238227 |
| Sechium edule | LG06 | 1 | CH_sed_26 | 5 | 5 | 0.0000000000012025 |
| Sechium edule | LG05 | 1 | CH_sed_27 | 5 | 5 | 0.0000000000012025 |
| Schrenkiella parvula | ch3-1 | 1 | CH_spa_126 | 3 | 5 | 0.0000032536 |
| Schrenkiella parvula | ch1-1 | 1 | CH_spa_309 | 3 | 26 | 0.000843141 |
| Theobroma cacao | Chromosome_6 | 1 | CH_tca_73 | 4 | 8 | 0.0000000000824943 |
| Tarenaya hassleriana | NW_010969548.1 | 1 | CH_tha_20 | 4 | 4 | 0.0000000000715663 |
| Tripterygium wilfordii | NC_052243.1 | 1 | CH_twi_17 | 5 | 7 | 0.00000000000000912979 |
| Aethionema arabicum | LG-1 | 2 | CH_aar_120 | 3 | 4 | 0.0000227135 |
| Aethionema arabicum | LG-1 | 2 | CH_aar_6 | 8 | 9 | 9.60336e-22 |
| Actinidia chinensis | Lachesis_group27 | 2 | CH_ach_38 | 3 | 5 | 0.000000177036 |
| Arabidopsis lyrata | scaffold_1 | 2 | CH_aly_67 | 5 | 33 | 0.00000000188619 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_3 | 2 | CH_amhyb_272 | 2 | 2 | 0.000841751 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 2 | CH_amhyb_39 | 3 | 3 | 0.000000106286 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_25 | 6 | 40 | 0.000000000000139945 |
| Brassica carinata | ChrC07 | 2 | CH_bca_212 | 4 | 7 | 0.0000000475285 |
| Brassica carinata | ChrB02 | 2 | CH_bca_306 | 5 | 42 | 0.000000367038 |
| Brassica carinata | ChrC05 | 2 | CH_bca_38 | 7 | 38 | 0.000000000000471505 |
| Brassica carinata | ChrC07 | 2 | CH_bca_427 | 3 | 3 | 0.00000410164 |
| Brassica carinata | ChrC05 | 2 | CH_bca_576 | 3 | 5 | 0.0000409952 |
| Brassica oleracea | C8 | 2 | CH_bol_194 | 3 | 4 | 0.00000986957 |
| Brassica oleracea | C5 | 2 | CH_bol_212 | 4 | 29 | 0.0000180883 |
| Brassica oleracea | C3 | 2 | CH_bol_222 | 3 | 5 | 0.0000246678 |
| Brassica oleracea | C8 | 2 | CH_bol_66 | 5 | 20 | 0.00000000348261 |
| Brassica rapa | A09 | 2 | CH_bra_169 | 3 | 4 | 0.0000147037 |
| Brassica rapa | A05 | 2 | CH_bra_206 | 3 | 6 | 0.0000734727 |
| Brassica rapa | A10 | 2 | CH_bra_216 | 4 | 38 | 0.000103765 |
| Brassica rapa | A03 | 2 | CH_bra_67 | 4 | 5 | 0.00000000710184 |
| Camellia sinensis var. sinensis | Chr15 | 2 | CH_camsi_711 | 2 | 4 | 0.000275116 |
| Cannabis sativa | NC_044371.1 | 2 | CH_cansat_244 | 2 | 2 | 0.0000656642 |
| Citrullus lanatus | CG_Chr07 | 2 | CH_cla_2 | 9 | 11 | 1.45455e-23 |
| Cucumis melo | chr07 | 2 | CH_cme_5 | 9 | 11 | 1.53143e-25 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3514 | 2 | CH_cqu_449 | 2 | 2 | 0.000284293 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3333 | 2 | CH_cqu_450 | 2 | 2 | 0.000284293 |
| Chlamydomonas reinhardtii | chromosome_4 | 2 | CH_cre_39 | 3 | 22 | 0.000119303 |
| Capsella rubella | scaffold_1 | 2 | CH_cru_152 | 3 | 3 | 0.000000280668 |
| Cucumis sativus L. | chr4 | 2 | CH_csa_11 | 7 | 7 | 2.11162e-20 |
| Cucumis sativus L. | chr1 | 2 | CH_csa_141 | 3 | 3 | 0.00000229961 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 2 | CH_eca_169 | 3 | 3 | 0.000000498357 |
| Eutrema salsugineum | scaffold_5 | 2 | CH_esa_53 | 5 | 27 | 0.00000000113707 |
| Fragaria x ananassa | Fvb6-1 | 2 | CH_fan_270 | 4 | 19 | 0.00000670485 |
| Fragaria x ananassa | Fvb6-3 | 2 | CH_fan_526 | 3 | 9 | 0.000425551 |
| Fragaria x ananassa | Fvb6-4 | 2 | CH_fan_642 | 3 | 11 | 0.000835459 |
| Fragaria vesca | Fvb6 | 2 | CH_fve_91 | 5 | 22 | 0.00000000305019 |
| Helianthus annuus | HanXRQChr04 | 2 | CH_han_319 | 4 | 13 | 0.00000184458 |
| Helianthus annuus | HanXRQChr10 | 2 | CH_han_324 | 4 | 14 | 0.00000258148 |
| Helianthus annuus | HanXRQChr02 | 2 | CH_han_56 | 6 | 9 | 0.0000000000000374625 |
| Lonicera japonica | GWHAAZE00000002 | 2 | CH_lonja_76 | 6 | 20 | 0.00000000000014086 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 2 | CH_lsa_106 | 5 | 12 | 0.000000000354555 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 2 | CH_lsa_217 | 4 | 12 | 0.000000615599 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 2 | CH_lsa_289 | 3 | 4 | 0.0000129316 |
| Olea europaea | chr12 | 2 | CH_oeu_214 | 2 | 3 | 0.000160132 |
| Physcomitrium patens | Chr17 | 2 | CH_ppa_185 | 2 | 2 | 0.000183818 |
| Prunus persica | Pp03 | 2 | CH_ppe_145 | 4 | 4 | 0.00000000603413 |
| Prunus persica | Pp04 | 2 | CH_ppe_32 | 8 | 10 | 2.29494e-20 |
| Prunus persica | Pp04 | 2 | CH_ppe_69 | 6 | 9 | 0.000000000000169029 |
| Papaver somniferum | NC_039363.1 | 2 | CH_pso_185 | 4 | 7 | 0.000000015168 |
| Papaver somniferum | NC_039358.1 | 2 | CH_pso_71 | 5 | 5 | 0.000000000000102555 |
| Populus trichocarpa | Chr11 | 2 | CH_ptr_156 | 3 | 4 | 0.0000000200451 |
| Quercus lobata | 5 | 2 | CH_qlo_210 | 4 | 7 | 0.00000000001445 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 2 | CH_rch_132 | 7 | 26 | 0.0000000000204731 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 2 | CH_rch_275 | 6 | 42 | 0.000000183706 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 2 | CH_rch_502 | 4 | 14 | 0.0000434896 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_630 | 3 | 4 | 0.000186763 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_743 | 3 | 5 | 0.00046657 |
| Salvia bowleyana | GWHASIU00000007 | 2 | CH_sbo_345 | 2 | 2 | 0.000136494 |
| Salix brachista | GWHAAZH00000011 | 2 | CH_sbr_114 | 3 | 5 | 0.000000238227 |
| Sechium edule | LG06 | 2 | CH_sed_26 | 5 | 5 | 0.0000000000012025 |
| Sechium edule | LG05 | 2 | CH_sed_27 | 5 | 5 | 0.0000000000012025 |
| Schrenkiella parvula | ch3-1 | 2 | CH_spa_126 | 3 | 5 | 0.0000032536 |
| Schrenkiella parvula | ch1-1 | 2 | CH_spa_309 | 3 | 26 | 0.000843141 |
| Theobroma cacao | Chromosome_6 | 2 | CH_tca_73 | 4 | 8 | 0.0000000000824943 |
| Tarenaya hassleriana | NW_010969548.1 | 2 | CH_tha_20 | 4 | 4 | 0.0000000000715663 |
| Tripterygium wilfordii | NC_052243.1 | 2 | CH_twi_17 | 5 | 7 | 0.00000000000000912979 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |