Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.fatty acid biosynthesis.fatty acid desaturation.trans-delta-3-hexadecenoic acid phosphatidylglycerol desaturase (FAD4)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-5 1 CH_aar_189 2 3 0.000273685
Acer truncatum chr2 1 CH_acertr_235 3 29 0.0000272156
Aquilegia oxysepala CHR01 1 CH_aox_179 2 2 0.0000801989
Brassica carinata ChrC06 1 CH_bca_1015 2 2 0.00059854
Brassica carinata ChrB03 1 CH_bca_1016 2 2 0.00059854
Brassica carinata ChrC07 1 CH_bca_259 3 4 0.00000015353
Brassica napus C08 1 CH_bna_259 3 5 0.000000619419
Brassica oleracea C8 1 CH_bol_96 3 4 0.0000000641015
Brassica rapa A08 1 CH_bra_281 2 2 0.000257588
Corylus avellana 6 1 CH_cav_370 2 2 0.000230008
Chenopodium quinoa C_Quinoa_Scaffold_1529 1 CH_cqu_378 2 2 0.000142146
Erythranthe guttata scaffold_8 1 CH_egut_143 3 3 0.000000031813
Eutrema salsugineum scaffold_1 1 CH_esa_64 3 3 0.00000000869853
Fragaria x ananassa Fvb3-2 1 CH_fan_438 2 2 0.000185036
Fragaria x ananassa Fvb3-4 1 CH_fan_567 2 3 0.000555093
Fragaria vesca Fvb3 1 CH_fve_328 2 3 0.000176725
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_277 3 24 0.00000801708
Prunus persica Pp04 1 CH_ppe_350 2 2 0.0000745962
Quercus lobata 8 1 CH_qlo_308 4 16 0.00000000375519
Striga asiatica scaffold9 1 CH_sas_133 2 3 0.000562805
Simmondsia chinensis GWHAASQ00000003 1 CH_sci_45 3 3 0.0000000108744
Schrenkiella parvula ch7-4 1 CH_spa_68 3 3 0.00000000929892
Utricularia gibba unitig_26 1 CH_ugi_265 2 2 0.000440755
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_270 2 2 0.0000929238
Zea mays 10 1 CH_zma_214 2 4 0.000306772
Aethionema arabicum LG-5 2 CH_aar_189 2 3 0.000273685
Acer truncatum chr2 2 CH_acertr_235 3 29 0.0000272156
Aquilegia oxysepala CHR01 2 CH_aox_179 2 2 0.0000801989
Brassica carinata ChrC06 2 CH_bca_1015 2 2 0.00059854
Brassica carinata ChrB03 2 CH_bca_1016 2 2 0.00059854
Brassica carinata ChrC07 2 CH_bca_259 3 4 0.00000015353
Brassica oleracea C8 2 CH_bol_96 3 4 0.0000000641015
Brassica rapa A08 2 CH_bra_281 2 2 0.000257588
Corylus avellana 6 2 CH_cav_370 2 2 0.000230008
Chenopodium quinoa C_Quinoa_Scaffold_1529 2 CH_cqu_378 2 2 0.000142146
Erythranthe guttata scaffold_8 2 CH_egut_143 3 3 0.000000031813
Eutrema salsugineum scaffold_1 2 CH_esa_64 3 3 0.00000000869853
Fragaria x ananassa Fvb3-2 2 CH_fan_438 2 2 0.000185036
Fragaria x ananassa Fvb3-4 2 CH_fan_567 2 3 0.000555093
Fragaria vesca Fvb3 2 CH_fve_328 2 3 0.000176725
Lotus japonicus chr6 2 CH_lja_302 2 3 0.000214516
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_277 3 24 0.00000801708
Prunus persica Pp04 2 CH_ppe_350 2 2 0.0000745962
Quercus lobata 8 2 CH_qlo_308 4 16 0.00000000375519
Striga asiatica scaffold9 2 CH_sas_133 2 3 0.000562805
Simmondsia chinensis GWHAASQ00000003 2 CH_sci_45 3 3 0.0000000108744
Schrenkiella parvula ch7-4 2 CH_spa_68 3 3 0.00000000929892
Utricularia gibba unitig_26 2 CH_ugi_265 2 2 0.000440755
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_270 2 2 0.0000929238
Zea mays 10 2 CH_zma_214 2 4 0.000306772

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001