Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.fatty acid biosynthesis.endoplasmic reticulum-localized fatty acid elongase (FAE) system.fatty acid elongation complex.condensing enzyme activities.condensing enzyme (ELO)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr6 1 CH_acertr_132 3 4 0.000000119273
Arabidopsis lyrata scaffold_3 1 CH_aly_356 2 2 0.000396027
Aquilegia oxysepala CHR06 1 CH_aox_60 3 3 0.0000000385927
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 1 CH_arhy_494 2 2 0.00017963
Arabidopsis thaliana Chr3 1 CH_ath_305 2 2 0.000171895
Brassica carinata ChrC09 1 CH_bca_26 5 6 0.0000000000000282158
Brassica carinata ChrB04 1 CH_bca_292 3 3 0.000000311873
Brassica oleracea C1 1 CH_bol_25 5 8 0.0000000000000603984
Brassica rapa A01 1 CH_bra_344 2 2 0.00064397
Corylus avellana 1 1 CH_cav_152 3 6 0.00000176302
Citrus clementina scaffold_5 1 CH_ccl_184 3 5 0.0000010092
Citrullus lanatus CG_Chr09 1 CH_cla_82 3 8 0.0000066072
Cucumis melo chr05 1 CH_cme_297 2 2 0.000667111
Capsella rubella scaffold_3 1 CH_cru_360 2 2 0.000438693
Cucumis sativus L. chr6 1 CH_csa_293 2 2 0.000500856
Eutrema salsugineum scaffold_13 1 CH_esa_274 2 2 0.000456899
Manihot esculenta Chromosome10 1 CH_mes_486 2 2 0.000915947
Populus trichocarpa Chr03 1 CH_ptr_423 2 2 0.000346801
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_784 2 3 0.000717541
Sequoiadendron giganteum HRSCAF_1 1 CH_sgi_1303 2 2 0.000487151
Sequoiadendron giganteum chr8 1 CH_sgi_1304 2 2 0.000487151
Schrenkiella parvula ch3-1 1 CH_spa_251 2 2 0.000472404
Solanum pennellii Spenn-ch01 1 CH_spe_241 3 11 0.0000171259
Theobroma cacao Chromosome_2 1 CH_tca_387 2 2 0.000439432
Acer truncatum chr6 2 CH_acertr_132 3 4 0.000000119273
Arabidopsis lyrata scaffold_3 2 CH_aly_356 2 2 0.000396027
Aquilegia oxysepala CHR06 2 CH_aox_60 3 3 0.0000000385927
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 2 CH_arhy_494 2 2 0.00017963
Arabidopsis thaliana Chr3 2 CH_ath_305 2 2 0.000171895
Brassica carinata ChrC09 2 CH_bca_26 5 6 0.0000000000000282158
Brassica carinata ChrB04 2 CH_bca_292 3 3 0.000000311873
Brassica oleracea C1 2 CH_bol_25 5 8 0.0000000000000603984
Brassica rapa A01 2 CH_bra_344 2 2 0.00064397
Corylus avellana 1 2 CH_cav_152 3 6 0.00000176302
Citrus clementina scaffold_5 2 CH_ccl_184 3 5 0.0000010092
Citrullus lanatus CG_Chr09 2 CH_cla_82 3 8 0.0000066072
Cucumis melo chr05 2 CH_cme_297 2 2 0.000667111
Capsella rubella scaffold_3 2 CH_cru_360 2 2 0.000438693
Cucumis sativus L. chr6 2 CH_csa_293 2 2 0.000500856
Eucalyptus grandis Chr09 2 CH_egr_768 2 2 0.000175582
Eutrema salsugineum scaffold_13 2 CH_esa_274 2 2 0.000456899
Manihot esculenta Chromosome10 2 CH_mes_486 2 2 0.000915947
Populus trichocarpa Chr03 2 CH_ptr_423 2 2 0.000346801
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_784 2 3 0.000717541
Sequoiadendron giganteum HRSCAF_1 2 CH_sgi_1303 2 2 0.000487151
Sequoiadendron giganteum chr8 2 CH_sgi_1304 2 2 0.000487151
Schrenkiella parvula ch3-1 2 CH_spa_251 2 2 0.000472404
Solanum pennellii Spenn-ch01 2 CH_spe_241 3 11 0.0000171259
Theobroma cacao Chromosome_2 2 CH_tca_387 2 2 0.000439432

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001