Functional clusters

Information

  • Type MapMan
  • Description Lipid metabolism.fatty acid biosynthesis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Lonicera japonica GWHAAZE00000002 1 CH_lonja_326 8 66 0.0000273548
Malus domestica Chr14 1 CH_mdo_531 4 6 0.000215051
Papaver somniferum NW_020624377.1 1 CH_pso_298 6 17 0.000000697346
Tarenaya hassleriana NW_010964923.1 1 CH_tha_163 5 15 0.00039457
Utricularia gibba unitig_736 1 CH_ugi_306 6 40 0.000878368
Lonicera japonica GWHAAZE00000002 2 CH_lonja_326 8 66 0.0000273548
Malus domestica Chr14 2 CH_mdo_531 4 6 0.000215051
Papaver somniferum NW_020624377.1 2 CH_pso_298 6 17 0.000000697346
Tarenaya hassleriana NW_010964923.1 2 CH_tha_163 5 15 0.00039457
Utricularia gibba unitig_736 2 CH_ugi_306 6 40 0.000878368

Available child term results

Ontology identifier Description Number of clusters
5.1.1.1 Lipid metabolism.fatty acid biosynthesis.citrate shuttle.mitochondrial dicarboxylate transporter 12
5.1.1.2.1 Lipid metabolism.fatty acid biosynthesis.citrate shuttle.ATP-dependent citrate lyase heterodimer.alpha chain 7
5.1.1.2.2 Lipid metabolism.fatty acid biosynthesis.citrate shuttle.ATP-dependent citrate lyase heterodimer.beta chain 14
5.1.1.3 Lipid metabolism.fatty acid biosynthesis.citrate shuttle.cytosolic NAD-dependent malate dehydrogenase 15
5.1.1.4 Lipid metabolism.fatty acid biosynthesis.citrate shuttle.cytosolic NADP-dependent malic enzyme 4
5.1.1.5 Lipid metabolism.fatty acid biosynthesis.citrate shuttle.MPC pyruvate carrier complex 2
5.1.1.5.1 Lipid metabolism.fatty acid biosynthesis.citrate shuttle.MPC pyruvate carrier complex.component MPC1 14
5.1.1.5.2 Lipid metabolism.fatty acid biosynthesis.citrate shuttle.MPC pyruvate carrier complex.component MPC2 25
5.1.2.2.1.1 Lipid metabolism.fatty acid biosynthesis.acetyl-CoA generation.plastidial pyruvate dehydrogenase complex.E1 pyruvate dehydrogenase subcomplex.subunit alpha 7
5.1.2.2.1.2 Lipid metabolism.fatty acid biosynthesis.acetyl-CoA generation.plastidial pyruvate dehydrogenase complex.E1 pyruvate dehydrogenase subcomplex.subunit beta 11
5.1.2.2.2 Lipid metabolism.fatty acid biosynthesis.acetyl-CoA generation.plastidial pyruvate dehydrogenase complex.dihydrolipoamide acetyltransferase component E2 2
5.1.2.2.3 Lipid metabolism.fatty acid biosynthesis.acetyl-CoA generation.plastidial pyruvate dehydrogenase complex.dihydrolipoamide dehydrogenase component E3 2
5.1.2.3 Lipid metabolism.fatty acid biosynthesis.acetyl-CoA generation.plastidial acetyl-CoA synthetase 19
5.1.2.4 Lipid metabolism.fatty acid biosynthesis.acetyl-CoA generation.malonyl-CoA decarboxylase 9
5.1.3.2.1 Lipid metabolism.fatty acid biosynthesis.acetyl-CoA carboxylation.polymeric acetyl-CoA carboxylase complex.carboxyltransferase subunit alpha 11
5.1.3.2.2 Lipid metabolism.fatty acid biosynthesis.acetyl-CoA carboxylation.polymeric acetyl-CoA carboxylase complex.carboxyltransferase subunit beta 8
5.1.3.2.3.1 Lipid metabolism.fatty acid biosynthesis.acetyl-CoA carboxylation.polymeric acetyl-CoA carboxylase complex.BC-BCCP-BADC subcomplex.biotin carboxylase subunit (BC) 4
5.1.3.2.3.2 Lipid metabolism.fatty acid biosynthesis.acetyl-CoA carboxylation.polymeric acetyl-CoA carboxylase complex.BC-BCCP-BADC subcomplex.biotin carboxyl carrier subunit (BCCP) 2
5.1.3.2.3.3 Lipid metabolism.fatty acid biosynthesis.acetyl-CoA carboxylation.polymeric acetyl-CoA carboxylase complex.BC-BCCP-BADC subcomplex.regulatory subunit (BADC) 4
5.1.4 Lipid metabolism.fatty acid biosynthesis.plastidial fatty acid synthase (ptFAS) system 2
5.1.4.1 Lipid metabolism.fatty acid biosynthesis.plastidial fatty acid synthase (ptFAS) system.acyl carrier protein (ptACP) 11
5.1.4.2.1 Lipid metabolism.fatty acid biosynthesis.plastidial fatty acid synthase (ptFAS) system.ketoacyl-ACP synthase (ptKAS) activities.ketoacyl-ACP synthase I 11
5.1.4.2.2 Lipid metabolism.fatty acid biosynthesis.plastidial fatty acid synthase (ptFAS) system.ketoacyl-ACP synthase (ptKAS) activities.ketoacyl-ACP synthase II 4
5.1.4.2.3 Lipid metabolism.fatty acid biosynthesis.plastidial fatty acid synthase (ptFAS) system.ketoacyl-ACP synthase (ptKAS) activities.ketoacyl-ACP synthase III 8
5.1.4.3 Lipid metabolism.fatty acid biosynthesis.plastidial fatty acid synthase (ptFAS) system.hydroxyacyl-ACP dehydratase (ptHD) 12
5.1.4.4 Lipid metabolism.fatty acid biosynthesis.plastidial fatty acid synthase (ptFAS) system.ketoacyl-ACP reductase (KAR) 6
5.1.4.5 Lipid metabolism.fatty acid biosynthesis.plastidial fatty acid synthase (ptFAS) system.enoyl-ACP reductase (ER) 4
5.1.4.6.1 Lipid metabolism.fatty acid biosynthesis.plastidial fatty acid synthase (ptFAS) system.elongation of exogenous fatty acid chains.medium-chain acyl-ACP synthetase 13
5.1.4.7.1 Lipid metabolism.fatty acid biosynthesis.plastidial fatty acid synthase (ptFAS) system.termination of fatty acid chains.oleoyl-ACP thioesterase (FATA) 8
5.1.4.7.2 Lipid metabolism.fatty acid biosynthesis.plastidial fatty acid synthase (ptFAS) system.termination of fatty acid chains.palmitoyl-ACP thioesterase (FATB) 8
5.1.5.1 Lipid metabolism.fatty acid biosynthesis.mitochondrial fatty acid synthase (mtFAS) system.acyl carrier protein (mtACP) 12
5.1.5.2 Lipid metabolism.fatty acid biosynthesis.mitochondrial fatty acid synthase (mtFAS) system.phosphopantetheinyl transferase (mtPPT) 11
5.1.5.3 Lipid metabolism.fatty acid biosynthesis.mitochondrial fatty acid synthase (mtFAS) system.malonyl-CoA synthetase (mtMCS) 2
5.1.5.4 Lipid metabolism.fatty acid biosynthesis.mitochondrial fatty acid synthase (mtFAS) system.malonyl-CoA:ACP transacylase (MCAT) 4
5.1.5.5 Lipid metabolism.fatty acid biosynthesis.mitochondrial fatty acid synthase (mtFAS) system.ketoacyl-ACP synthase (mtKAS) 2
5.1.5.6 Lipid metabolism.fatty acid biosynthesis.mitochondrial fatty acid synthase (mtFAS) system.hydroxyacyl-ACP dehydratase (mtHD) 8
5.1.5.7 Lipid metabolism.fatty acid biosynthesis.mitochondrial fatty acid synthase (mtFAS) system.enoyl-ACP reductase (mtER) 15
5.1.6.1 Lipid metabolism.fatty acid biosynthesis.endoplasmic reticulum-localized fatty acid elongase (FAE) system.fatty acid elongation complex 2
5.1.6.1.1 Lipid metabolism.fatty acid biosynthesis.endoplasmic reticulum-localized fatty acid elongase (FAE) system.fatty acid elongation complex.3-ketoacyl-CoA reductase (KCR) 96
5.1.6.1.2 Lipid metabolism.fatty acid biosynthesis.endoplasmic reticulum-localized fatty acid elongase (FAE) system.fatty acid elongation complex.3-hydroxyacyl-CoA dehydratase (HCD) 2
5.1.6.1.3 Lipid metabolism.fatty acid biosynthesis.endoplasmic reticulum-localized fatty acid elongase (FAE) system.fatty acid elongation complex.enoyl-CoA reductase (ECR) 4
5.1.6.1.4 Lipid metabolism.fatty acid biosynthesis.endoplasmic reticulum-localized fatty acid elongase (FAE) system.fatty acid elongation complex.condensing enzyme activities 2
5.1.6.1.4.1 Lipid metabolism.fatty acid biosynthesis.endoplasmic reticulum-localized fatty acid elongase (FAE) system.fatty acid elongation complex.condensing enzyme activities.3-ketoacyl-CoA synthase (KCS) 109
5.1.6.1.4.2 Lipid metabolism.fatty acid biosynthesis.endoplasmic reticulum-localized fatty acid elongase (FAE) system.fatty acid elongation complex.condensing enzyme activities.condensing enzyme (ELO) 49
5.1.6.2.1 Lipid metabolism.fatty acid biosynthesis.endoplasmic reticulum-localized fatty acid elongase (FAE) system.very long chain fatty acid elongation.catalytic protein (CER2) 25
5.1.7.2 Lipid metabolism.fatty acid biosynthesis.fatty acid desaturation.delta-9 stearoyl-ACP desaturase 82
5.1.7.3 Lipid metabolism.fatty acid biosynthesis.fatty acid desaturation.delta-12/delta-15 fatty acid desaturase (FAD2/3/6-8) 52
5.1.7.4 Lipid metabolism.fatty acid biosynthesis.fatty acid desaturation.trans-delta-3-hexadecenoic acid phosphatidylglycerol desaturase (FAD4) 50
5.1.7.5 Lipid metabolism.fatty acid biosynthesis.fatty acid desaturation.delta-7/delta-9 fatty acid desaturase (FAD5/ADS) 140

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001