Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.degradation.aromatic amino acid.tyrosine.maleylacetoacetate isomerase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-2 1 CH_aar_27 4 4 0.0000000000022784
Arabidopsis lyrata scaffold_5 1 CH_aly_232 2 2 0.0000660044
Amaranthus hybridus AmaHy_arrow1_Scaffold_2 1 CH_amhyb_201 2 2 0.000252525
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 1 CH_arhy_412 3 7 0.0000319765
Arabidopsis thaliana Chr2 1 CH_ath_222 2 2 0.0000286492
Beta vulgaris Chr1_EL10_PGA_scaffold3 1 CH_bvu_280 2 3 0.000745074
Cannabis sativa NC_044373.1 1 CH_cansat_276 2 3 0.000196986
Capsicum annuum PGAv.1.6.scaffold1379 1 CH_can_344 2 2 0.000247831
Coffea canephora chr2 1 CH_ccan_35 4 32 0.00000000000735669
Citrus clementina scaffold_5 1 CH_ccl_232 3 13 0.0000115393
Carya illinoinensis Chr12 1 CH_cil_427 2 2 0.000185948
Capsella rubella scaffold_5 1 CH_cru_326 2 2 0.000219346
Eutrema salsugineum scaffold_6 1 CH_esa_176 2 2 0.0000761499
Glycine max Gm17 1 CH_gma_380 2 2 0.000113867
Helianthus annuus HanXRQChr16 1 CH_han_236 3 3 0.000000125437
Lupinus albus Lalb_Chr21 1 CH_lal_241 2 3 0.000157443
Lonicera japonica GWHAAZE00000005 1 CH_lonja_271 3 11 0.00000354925
Lactuca sativa Lsat_1_v8_lg_9 1 CH_lsa_454 2 2 0.000308404
Magnolia biondii Chr06 1 CH_mbi_166 3 4 0.000000141515
Medicago truncatula chr4 1 CH_mtr_199 3 3 0.00000000253218
Oryza sativa ssp. japonica chr12 1 CH_osa_312 2 2 0.000316874
Punica granatum NC_045128.1 1 CH_pgr_212 2 2 0.0000750356
Papaver somniferum NC_039362.1 1 CH_pso_537 2 2 0.000225233
Papaver somniferum NC_039365.1 1 CH_pso_538 2 2 0.000225233
Quercus lobata CM012294 1 CH_qlo_360 3 3 0.0000000159937
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_279 3 6 0.000000190692
Rhododendron simsii chr11 1 CH_rsi_149 4 13 0.00000000864036
Sechium edule LG01 1 CH_sed_320 2 3 0.000642039
Sequoiadendron giganteum chr3 1 CH_sgi_530 3 5 0.000000142381
Trifolium pratense Tp57577_TGAC_v2_LG2 1 CH_tpr_231 2 2 0.0000756974
Vigna mungo CM024074.1 1 CH_vmu_290 2 2 0.000193842
Vitis vinifera chr12 1 CH_vvi_342 2 2 0.000228189
Aethionema arabicum LG-2 2 CH_aar_27 4 4 0.0000000000022784
Arabidopsis lyrata scaffold_5 2 CH_aly_232 2 2 0.0000660044
Amaranthus hybridus AmaHy_arrow1_Scaffold_2 2 CH_amhyb_201 2 2 0.000252525
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 2 CH_arhy_412 3 7 0.0000319765
Arabidopsis thaliana Chr2 2 CH_ath_222 2 2 0.0000286492
Beta vulgaris Chr1_EL10_PGA_scaffold3 2 CH_bvu_280 2 3 0.000745074
Cannabis sativa NC_044373.1 2 CH_cansat_276 2 3 0.000196986
Capsicum annuum PGAv.1.6.scaffold1379 2 CH_can_344 2 2 0.000247831
Coffea canephora chr2 2 CH_ccan_35 4 32 0.00000000000735669
Citrus clementina scaffold_5 2 CH_ccl_232 3 13 0.0000115393
Carya illinoinensis Chr12 2 CH_cil_427 2 2 0.000185948
Capsella rubella scaffold_5 2 CH_cru_326 2 2 0.000219346
Eutrema salsugineum scaffold_6 2 CH_esa_176 2 2 0.0000761499
Glycine max Gm17 2 CH_gma_380 2 2 0.000113867
Helianthus annuus HanXRQChr16 2 CH_han_236 3 3 0.000000125437
Lupinus albus Lalb_Chr21 2 CH_lal_241 2 3 0.000157443
Lonicera japonica GWHAAZE00000005 2 CH_lonja_271 3 11 0.00000354925
Lactuca sativa Lsat_1_v8_lg_9 2 CH_lsa_454 2 2 0.000308404
Magnolia biondii Chr06 2 CH_mbi_166 3 4 0.000000141515
Oryza sativa ssp. japonica chr12 2 CH_osa_312 2 2 0.000316874
Punica granatum NC_045128.1 2 CH_pgr_212 2 2 0.0000750356
Papaver somniferum NC_039362.1 2 CH_pso_537 2 2 0.000225233
Papaver somniferum NC_039365.1 2 CH_pso_538 2 2 0.000225233
Quercus lobata CM012294 2 CH_qlo_360 3 3 0.0000000159937
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_279 3 6 0.000000190692
Rhododendron simsii chr11 2 CH_rsi_149 4 13 0.00000000864036
Sechium edule LG01 2 CH_sed_320 2 3 0.000642039
Sequoiadendron giganteum chr3 2 CH_sgi_530 3 5 0.000000142381
Trifolium pratense Tp57577_TGAC_v2_LG2 2 CH_tpr_231 2 2 0.0000756974
Vigna mungo CM024074.1 2 CH_vmu_290 2 2 0.000193842
Vitis vinifera chr12 2 CH_vvi_342 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001