Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.degradation.branched-chain amino acid.valine.methylmalonate-semialdehyde dehydrogenase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Avicennia marina ScioBoG_26180_HRSCAF_26306 1 CH_ama_54 2 2 0.0000862218
Camellia sinensis var. sinensis Chr3 1 CH_camsi_654 2 2 0.000137564
Corylus avellana 9 1 CH_cav_108 3 4 0.000000141073
Coffea canephora chr2 1 CH_ccan_332 2 13 0.000574936
Citrus clementina scaffold_8 1 CH_ccl_392 2 2 0.000246093
Carpinus fangiana Cfa02 1 CH_cfa_304 2 2 0.000227204
Carica papaya supercontig_20 1 CH_cpa_371 2 3 0.000855527
Chenopodium quinoa C_Quinoa_Scaffold_2587 1 CH_cqu_159 3 4 0.000000134699
Davidia involucrata GWHABJS00000005 1 CH_din_499 2 2 0.000750188
Davidia involucrata GWHABJS00000002 1 CH_din_500 2 2 0.000750188
Durio zibethinus NW_019168048.1 1 CH_dzi_286 2 2 0.000278093
Erythranthe guttata scaffold_2 1 CH_egut_345 2 3 0.000218436
Fragaria vesca Fvb2 1 CH_fve_432 2 3 0.000530165
Gossypium raimondii Chr05 1 CH_gra_305 2 2 0.000160832
Manihot esculenta Chromosome10 1 CH_mes_419 2 2 0.000366379
Punica granatum NC_045128.1 1 CH_pgr_286 2 2 0.000225107
Prunus persica Pp08 1 CH_ppe_487 2 3 0.000671324
Populus trichocarpa Chr09 1 CH_ptr_505 2 2 0.000578001
Quercus lobata 11 1 CH_qlo_808 2 2 0.000154887
Salvia bowleyana GWHASIU00000002 1 CH_sbo_357 3 46 0.000188223
Salix brachista GWHAAZH00000009 1 CH_sbr_224 2 2 0.000063014
Theobroma cacao Chromosome_2 1 CH_tca_349 2 2 0.000219716
Tarenaya hassleriana NW_010963495.1 1 CH_tha_128 2 3 0.000209534
Tripterygium wilfordii NC_052248.1 1 CH_twi_216 2 2 0.000167252
Vitis vinifera chr3 1 CH_vvi_272 2 2 0.000076063
Avicennia marina ScioBoG_26180_HRSCAF_26306 2 CH_ama_54 2 2 0.0000862218
Camellia sinensis var. sinensis Chr3 2 CH_camsi_654 2 2 0.000137564
Corylus avellana 9 2 CH_cav_108 3 4 0.000000141073
Coffea canephora chr2 2 CH_ccan_332 2 13 0.000574936
Citrus clementina scaffold_8 2 CH_ccl_392 2 2 0.000246093
Carpinus fangiana Cfa02 2 CH_cfa_304 2 2 0.000227204
Carica papaya supercontig_20 2 CH_cpa_371 2 3 0.000855527
Chenopodium quinoa C_Quinoa_Scaffold_2587 2 CH_cqu_159 3 4 0.000000134699
Davidia involucrata GWHABJS00000005 2 CH_din_499 2 2 0.000750188
Davidia involucrata GWHABJS00000002 2 CH_din_500 2 2 0.000750188
Durio zibethinus NW_019168048.1 2 CH_dzi_286 2 2 0.000278093
Eucalyptus grandis Chr09 2 CH_egr_683 2 2 0.0000585274
Erythranthe guttata scaffold_2 2 CH_egut_345 2 3 0.000218436
Fragaria vesca Fvb2 2 CH_fve_432 2 3 0.000530165
Gossypium hirsutum A03 2 CH_ghi_695 2 2 0.000400523
Gossypium hirsutum D02 2 CH_ghi_696 2 2 0.000400523
Gossypium raimondii Chr05 2 CH_gra_305 2 2 0.000160832
Manihot esculenta Chromosome10 2 CH_mes_419 2 2 0.000366379
Punica granatum NC_045128.1 2 CH_pgr_286 2 2 0.000225107
Prunus persica Pp08 2 CH_ppe_487 2 3 0.000671324
Populus trichocarpa Chr09 2 CH_ptr_505 2 2 0.000578001
Quercus lobata 11 2 CH_qlo_808 2 2 0.000154887
Salvia bowleyana GWHASIU00000002 2 CH_sbo_357 3 46 0.000188223
Salix brachista GWHAAZH00000009 2 CH_sbr_224 2 2 0.000063014
Theobroma cacao Chromosome_2 2 CH_tca_349 2 2 0.000219716
Tarenaya hassleriana NW_010963495.1 2 CH_tha_128 2 3 0.000209534
Tripterygium wilfordii NC_052248.1 2 CH_twi_216 2 2 0.000167252
Vitis vinifera chr3 2 CH_vvi_272 2 2 0.000076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001