Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.degradation.lysine.bifunctional lysine ketoglutarate reductase and saccharopine dehydrogenase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr7 1 CH_acertr_394 2 3 0.000211484
Arabidopsis lyrata scaffold_7 1 CH_aly_243 2 2 0.0000660044
Brassica napus A03 1 CH_bna_543 2 2 0.000185515
Brassica oleracea C7 1 CH_bol_280 2 2 0.0000980584
Brassica rapa A03 1 CH_bra_238 2 2 0.000128794
Beta vulgaris Chr8_EL10_PGA_scaffold4 1 CH_bvu_219 2 3 0.000248365
Capsicum annuum PGAv.1.6.scaffold86 1 CH_can_325 2 3 0.000247821
Citrus clementina scaffold_1 1 CH_ccl_377 2 3 0.000246083
Capsella rubella scaffold_7 1 CH_cru_279 2 2 0.0000731154
Durio zibethinus NW_019168159.1 1 CH_dzi_237 2 2 0.000139047
Lonicera japonica GWHAAZE00000004 1 CH_lonja_598 2 5 0.00059882
Malus domestica Chr02 1 CH_mdo_536 2 4 0.000227518
Papaver somniferum NW_020631041.1 1 CH_pso_604 2 4 0.000405404
Sequoiadendron giganteum chr4 1 CH_sgi_1198 2 4 0.000292277
Solanum pennellii Spenn-ch07 1 CH_spe_344 2 3 0.000133434
Solanum tuberosum ST4.03ch07 1 CH_stu_191 3 9 0.000000330843
Theobroma cacao Chromosome_9 1 CH_tca_426 2 5 0.000732306
Tripterygium wilfordii NC_052240.1 1 CH_twi_183 2 2 0.0000557507
Acer truncatum chr7 2 CH_acertr_394 2 3 0.000211484
Arabidopsis lyrata scaffold_7 2 CH_aly_243 2 2 0.0000660044
Brassica oleracea C7 2 CH_bol_280 2 2 0.0000980584
Brassica rapa A03 2 CH_bra_238 2 2 0.000128794
Beta vulgaris Chr8_EL10_PGA_scaffold4 2 CH_bvu_219 2 3 0.000248365
Capsicum annuum PGAv.1.6.scaffold86 2 CH_can_325 2 3 0.000247821
Citrus clementina scaffold_1 2 CH_ccl_377 2 3 0.000246083
Capsella rubella scaffold_7 2 CH_cru_279 2 2 0.0000731154
Durio zibethinus NW_019168159.1 2 CH_dzi_237 2 2 0.000139047
Lonicera japonica GWHAAZE00000004 2 CH_lonja_598 2 5 0.00059882
Malus domestica Chr02 2 CH_mdo_536 2 4 0.000227518
Papaver somniferum NW_020631041.1 2 CH_pso_604 2 4 0.000405404
Sequoiadendron giganteum chr4 2 CH_sgi_1198 2 4 0.000292277
Solanum pennellii Spenn-ch07 2 CH_spe_344 2 3 0.000133434
Solanum tuberosum ST4.03ch07 2 CH_stu_191 3 9 0.000000330843
Theobroma cacao Chromosome_9 2 CH_tca_426 2 5 0.000732306
Tripterygium wilfordii NC_052240.1 2 CH_twi_183 2 2 0.0000557507

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001