Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.degradation.gamma-aminobutyrate (GABA).gamma-hydroxybutyrate formation.bifunctional gamma-hydroxybutyrate dehydrogenase and glyoxylate reductase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Cucumis melo chr04 1 CH_cme_221 2 3 0.000200127
Cucumis sativus L. chr3 1 CH_csa_208 2 2 0.0000834759
Erigeron canadensis Conyza_canadensis_scaffold:9 1 CH_eca_495 2 4 0.00080764
Magnolia biondii Chr07 1 CH_mbi_560 2 3 0.000437077
Populus trichocarpa Chr03 1 CH_ptr_477 2 3 0.000520176
Sechium edule LG06 1 CH_sed_203 2 2 0.0000713419
Sequoiadendron giganteum chr2 1 CH_sgi_1111 2 2 0.000146145
Cucumis melo chr04 2 CH_cme_221 2 3 0.000200127
Cucumis sativus L. chr3 2 CH_csa_208 2 2 0.0000834759
Erigeron canadensis Conyza_canadensis_scaffold:9 2 CH_eca_495 2 4 0.00080764
Magnolia biondii Chr07 2 CH_mbi_560 2 3 0.000437077
Populus trichocarpa Chr03 2 CH_ptr_477 2 3 0.000520176
Sechium edule LG06 2 CH_sed_203 2 2 0.0000713419
Sequoiadendron giganteum chr2 2 CH_sgi_1111 2 2 0.000146145

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001