Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.degradation.arginine.arginase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr5 1 CH_acertr_393 2 3 0.000211484
Camellia sinensis var. sinensis Chr3 1 CH_camsi_246 3 6 0.0000000630768
Corchorus olitorius AWUE01018676.1 1 CH_col_105 2 3 0.000876168
Capsella rubella scaffold_6 1 CH_cru_311 2 3 0.000219338
Helianthus annuus HanXRQChr16 1 CH_han_484 2 3 0.000115926
Lotus japonicus chr3 1 CH_lja_42 4 4 0.00000000000109705
Medicago truncatula chr4 1 CH_mtr_589 2 3 0.000123256
Pisum sativum chr6LG2 1 CH_psa_101 3 4 0.0000000653034
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_189 3 3 0.00000000238391
Simmondsia chinensis GWHAASQ00000026 1 CH_sci_49 3 4 0.0000000434956
Sequoiadendron giganteum chr2 1 CH_sgi_930 2 2 0.0000487151
Solanum lycopersicum SL4.0ch01 1 CH_sly_348 2 2 0.0000586941
Solanum pennellii Spenn-ch01 1 CH_spe_297 2 2 0.000044479
Theobroma cacao Chromosome_8 1 CH_tca_299 2 2 0.0000732386
Trifolium pratense Tp57577_TGAC_v2_scaf_545 1 CH_tpr_252 2 2 0.0000756974
Acer truncatum chr5 2 CH_acertr_393 2 3 0.000211484
Camellia sinensis var. sinensis Chr3 2 CH_camsi_246 3 6 0.0000000630768
Corchorus olitorius AWUE01018676.1 2 CH_col_105 2 3 0.000876168
Capsella rubella scaffold_6 2 CH_cru_311 2 3 0.000219338
Gossypium hirsutum A05 2 CH_ghi_503 2 2 0.0000801047
Helianthus annuus HanXRQChr16 2 CH_han_484 2 3 0.000115926
Lotus japonicus chr3 2 CH_lja_42 4 4 0.00000000000109705
Pisum sativum chr6LG2 2 CH_psa_101 3 4 0.0000000653034
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_189 3 3 0.00000000238391
Simmondsia chinensis GWHAASQ00000026 2 CH_sci_49 3 4 0.0000000434956
Sequoiadendron giganteum chr2 2 CH_sgi_930 2 2 0.0000487151
Solanum lycopersicum SL4.0ch01 2 CH_sly_348 2 2 0.0000586941
Solanum pennellii Spenn-ch01 2 CH_spe_297 2 2 0.000044479
Theobroma cacao Chromosome_8 2 CH_tca_299 2 2 0.0000732386
Trifolium pratense Tp57577_TGAC_v2_scaf_545 2 CH_tpr_252 2 2 0.0000756974

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001