Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.arogenate dehydratase (ADT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC07 1 CH_bca_376 3 3 0.0000015765
Brassica carinata ChrC07 1 CH_bca_43 5 7 0.00000000000174673
Corylus avellana 6 1 CH_cav_479 2 2 0.000766695
Chenopodium quinoa C_Quinoa_Scaffold_4082 1 CH_cqu_614 2 2 0.000995025
Marchantia polymorpha scaffold_24 1 CH_mpo_101 2 2 0.000331327
Pisum sativum chr4LG4 1 CH_psa_404 2 2 0.000782452
Papaver somniferum NC_039366.1 1 CH_pso_283 3 3 0.000000426135
Rhododendron simsii chr01 1 CH_rsi_582 2 2 0.000967961
Selenicereus undatus Scaffold_3410 1 CH_sun_278 2 2 0.000726639
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_28 7 27 0.00000000000000538842
Brassica carinata ChrC07 2 CH_bca_376 3 3 0.0000015765
Brassica carinata ChrC07 2 CH_bca_43 5 7 0.00000000000174673
Corylus avellana 6 2 CH_cav_479 2 2 0.000766695
Chenopodium quinoa C_Quinoa_Scaffold_4082 2 CH_cqu_614 2 2 0.000995025
Marchantia polymorpha scaffold_24 2 CH_mpo_101 2 2 0.000331327
Pisum sativum chr4LG4 2 CH_psa_404 2 2 0.000782452
Papaver somniferum NC_039366.1 2 CH_pso_283 3 3 0.000000426135
Rhododendron simsii chr01 2 CH_rsi_582 2 2 0.000967961
Selenicereus undatus Scaffold_3410 2 CH_sun_278 2 2 0.000726639
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_28 7 27 0.00000000000000538842

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001