Functional clusters
Information
- Type MapMan
- Description Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Punica granatum | NC_045134.1 | 1 | CH_pgr_353 | 3 | 13 | 0.000688636 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_492 | 5 | 32 | 0.0000000369118 |
| Punica granatum | NC_045134.1 | 2 | CH_pgr_353 | 3 | 13 | 0.000688636 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_492 | 5 | 32 | 0.0000000369118 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 4.1.5.2.1 | Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.chorismate mutase | 5 |
| 4.1.5.2.2 | Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.prephenate aminotransferase (PPA-AT) | 13 |
| 4.1.5.2.3 | Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.arogenate dehydrogenase (ADH) | 34 |
| 4.1.5.2.4 | Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.arogenate dehydratase (ADT) | 20 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |