Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata Contig372 1 CH_bca_1096 2 2 0.000769551
Capsicum annuum PGAv.1.6.scaffold905 1 CH_can_403 2 2 0.000495663
Magnolia biondii Chr05 1 CH_mbi_460 2 2 0.000145698
Nelumbo nucifera chr1 1 CH_nnu_406 2 2 0.000436015
Rhododendron simsii chr08 1 CH_rsi_559 2 2 0.000645307
Simmondsia chinensis GWHAASQ00000026 1 CH_sci_254 2 2 0.000510856
Solanum tuberosum ST4.03ch11 1 CH_stu_516 2 2 0.000307472
Trochodendron aralioides group11 1 CH_tar_358 2 2 0.00018011
Brassica carinata Contig372 2 CH_bca_1096 2 2 0.000769551
Capsicum annuum PGAv.1.6.scaffold905 2 CH_can_403 2 2 0.000495663
Gossypium hirsutum D05 2 CH_ghi_780 2 2 0.000560733
Magnolia biondii Chr05 2 CH_mbi_460 2 2 0.000145698
Nelumbo nucifera chr1 2 CH_nnu_406 2 2 0.000436015
Rhododendron simsii chr08 2 CH_rsi_559 2 2 0.000645307
Simmondsia chinensis GWHAASQ00000026 2 CH_sci_254 2 2 0.000510856
Solanum tuberosum ST4.03ch11 2 CH_stu_516 2 2 0.000307472
Trochodendron aralioides group11 2 CH_tar_358 2 2 0.00018011

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001