Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.serine family

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 1 CH_acertr_175 4 12 0.00000123442
Fragaria x ananassa Fvb1-2 1 CH_fan_445 3 6 0.000201121
Malus domestica Chr02 1 CH_mdo_387 3 5 0.0000381784
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_158 5 16 0.000000000360652
Acer truncatum chr3 2 CH_acertr_175 4 12 0.00000123442
Fragaria x ananassa Fvb1-2 2 CH_fan_445 3 6 0.000201121
Malus domestica Chr02 2 CH_mdo_387 3 5 0.0000381784
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_158 5 16 0.000000000360652

Available child term results

Ontology identifier Description Number of clusters
4.1.4.1.1 Amino acid metabolism.biosynthesis.serine family.non-photorespiratory serine.phosphoglycerate dehydrogenase 10
4.1.4.1.2 Amino acid metabolism.biosynthesis.serine family.non-photorespiratory serine.phosphoserine aminotransferase 8
4.1.4.1.3 Amino acid metabolism.biosynthesis.serine family.non-photorespiratory serine.phosphoserine phosphatase 4
4.1.4.2.1 Amino acid metabolism.biosynthesis.serine family.cysteine.serine O-acetyltransferase (SAT) 16
4.1.4.2.2 Amino acid metabolism.biosynthesis.serine family.cysteine.O-acetylserine sulfydrylase (OASS) 19
4.1.4.3.1 Amino acid metabolism.biosynthesis.serine family.glycine.serine hydroxymethyltransferase (SHM) 8

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001