Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.valine/leucine/isoleucine aminotransferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr13 1 CH_acertr_56 4 6 0.000000000236473
Arabidopsis lyrata scaffold_1 1 CH_aly_59 4 5 0.000000000543441
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 1 CH_arhy_244 3 3 0.000000221838
Arabidopsis thaliana Chr1 1 CH_ath_368 2 2 0.000429738
Amborella trichopoda AmTr_v1.0_scaffold00044 1 CH_atr_108 3 7 0.000000757172
Beta vulgaris Chr8_EL10_PGA_scaffold4 1 CH_bvu_292 2 2 0.000827917
Chara braunii BFEA01000002 1 CH_cbr_60 2 2 0.0000719269
Citrus clementina scaffold_8 1 CH_ccl_96 4 7 0.00000000202798
Carica papaya supercontig_20 1 CH_cpa_335 2 2 0.000570396
Chenopodium quinoa C_Quinoa_Scaffold_2896 1 CH_cqu_176 3 3 0.000000282885
Durio zibethinus NW_019167915.1 1 CH_dzi_398 2 2 0.000973326
Erigeron canadensis Conyza_canadensis_scaffold:7 1 CH_eca_425 2 3 0.000403835
Fragaria x ananassa Fvb2-2 1 CH_fan_251 3 5 0.00000418987
Fragaria vesca Fvb2 1 CH_fve_449 2 2 0.000589102
Glycine max Gm08 1 CH_gma_230 3 5 0.00000181486
Hydrangea macrophylla Hma1.2p1_0424F.1 1 CH_hma_148 2 2 0.000111086
Manihot esculenta Chromosome05 1 CH_mes_484 2 2 0.000915947
Manihot esculenta Chromosome18 1 CH_mes_485 2 2 0.000915947
Olea europaea chr18 1 CH_oeu_293 2 2 0.000320273
Petunia axillaris Peaxi162Scf00628 1 CH_pax_343 2 2 0.000703556
Prunus persica Pp01 1 CH_ppe_187 3 3 0.000000166944
Populus trichocarpa Chr09 1 CH_ptr_422 2 2 0.000346801
Phaseolus vulgaris Chr02 1 CH_pvu_394 2 2 0.000440836
Quercus lobata CM012294 1 CH_qlo_470 3 4 0.000000559721
Quercus lobata 11 1 CH_qlo_507 3 5 0.00000139916
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_457 3 13 0.0000381445
Sapria himalayana scaffold12_13443846 1 CH_shi_142 2 3 0.000171536
Schrenkiella parvula ch1-2 1 CH_spa_26 5 6 0.000000000000217901
Solanum pennellii Spenn-ch04 1 CH_spe_500 2 2 0.000667186
Solanum tuberosum ST4.03ch12 1 CH_stu_599 2 2 0.000768679
Trochodendron aralioides group11 1 CH_tar_550 2 2 0.000900549
Theobroma cacao Chromosome_8 1 CH_tca_186 3 4 0.000000643614
Vigna mungo CM024069.1 1 CH_vmu_327 2 2 0.000387685
Vitis vinifera chr18 1 CH_vvi_327 2 2 0.000228189
Acer truncatum chr13 2 CH_acertr_56 4 6 0.000000000236473
Arabidopsis lyrata scaffold_1 2 CH_aly_59 4 5 0.000000000543441
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 2 CH_arhy_244 3 3 0.000000221838
Arabidopsis thaliana Chr1 2 CH_ath_368 2 2 0.000429738
Amborella trichopoda AmTr_v1.0_scaffold00044 2 CH_atr_108 3 7 0.000000757172
Beta vulgaris Chr8_EL10_PGA_scaffold4 2 CH_bvu_292 2 2 0.000827917
Chara braunii BFEA01000002 2 CH_cbr_60 2 2 0.0000719269
Citrus clementina scaffold_8 2 CH_ccl_96 4 7 0.00000000202798
Carica papaya supercontig_20 2 CH_cpa_335 2 2 0.000570396
Chenopodium quinoa C_Quinoa_Scaffold_2896 2 CH_cqu_176 3 3 0.000000282885
Durio zibethinus NW_019167915.1 2 CH_dzi_398 2 2 0.000973326
Erigeron canadensis Conyza_canadensis_scaffold:7 2 CH_eca_425 2 3 0.000403835
Fragaria x ananassa Fvb2-2 2 CH_fan_251 3 5 0.00000418987
Fragaria vesca Fvb2 2 CH_fve_449 2 2 0.000589102
Glycine max Gm08 2 CH_gma_230 3 5 0.00000181486
Hydrangea macrophylla Hma1.2p1_0424F.1 2 CH_hma_148 2 2 0.000111086
Manihot esculenta Chromosome05 2 CH_mes_484 2 2 0.000915947
Manihot esculenta Chromosome18 2 CH_mes_485 2 2 0.000915947
Olea europaea chr18 2 CH_oeu_293 2 2 0.000320273
Petunia axillaris Peaxi162Scf00628 2 CH_pax_343 2 2 0.000703556
Prunus persica Pp01 2 CH_ppe_187 3 3 0.000000166944
Populus trichocarpa Chr09 2 CH_ptr_422 2 2 0.000346801
Phaseolus vulgaris Chr02 2 CH_pvu_394 2 2 0.000440836
Quercus lobata CM012294 2 CH_qlo_470 3 4 0.000000559721
Quercus lobata 11 2 CH_qlo_507 3 5 0.00000139916
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_457 3 13 0.0000381445
Sapria himalayana scaffold12_13443846 2 CH_shi_142 2 3 0.000171536
Schrenkiella parvula ch1-2 2 CH_spa_26 5 6 0.000000000000217901
Solanum pennellii Spenn-ch04 2 CH_spe_500 2 2 0.000667186
Solanum tuberosum ST4.03ch12 2 CH_stu_599 2 2 0.000768679
Trochodendron aralioides group11 2 CH_tar_550 2 2 0.000900549
Theobroma cacao Chromosome_8 2 CH_tca_186 3 4 0.000000643614
Vigna mungo CM024069.1 2 CH_vmu_327 2 2 0.000387685
Vitis vinifera chr18 2 CH_vvi_327 2 2 0.000228189

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001