Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.acireductone dioxygenase (ARD)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group3 1 CH_ach_171 2 2 0.000325928
Avicennia marina ScioBoG_12795_HRSCAF_12848 1 CH_ama_78 2 2 0.000258665
Aquilegia oxysepala CHR02 1 CH_aox_139 2 2 0.0000801989
Amborella trichopoda AmTr_v1.0_scaffold00002 1 CH_atr_159 2 2 0.0000794407
Camellia sinensis var. sinensis Chr9 1 CH_camsi_716 2 2 0.000275128
Cannabis sativa NC_044376.1 1 CH_cansat_209 2 2 0.0000656642
Capsicum annuum PGAv.1.6.scaffold1437 1 CH_can_328 2 2 0.000247831
Cicer arietinum L. Ca_LG4_v3 1 CH_car_202 2 3 0.000233481
Coffea canephora chr3 1 CH_ccan_207 2 7 0.0000638831
Citrus clementina scaffold_9 1 CH_ccl_278 2 2 0.0000820311
Carya illinoinensis Chr02 1 CH_cil_408 2 2 0.000185948
Carica papaya supercontig_44 1 CH_cpa_153 2 2 0.0000950661
Daucus carota DCARv2_Chr1 1 CH_dca_276 2 2 0.000191333
Durio zibethinus NW_019167904.1 1 CH_dzi_223 2 2 0.000139047
Erythranthe guttata scaffold_7 1 CH_egut_274 2 2 0.0000728147
Fragaria vesca Fvb4 1 CH_fve_254 2 2 0.0000589102
Glycine max Gm20 1 CH_gma_417 2 2 0.000227734
Glycine max Gm10 1 CH_gma_576 2 3 0.000683172
Lonicera japonica GWHAAZE00000006 1 CH_lonja_525 2 2 0.000359324
Malus domestica Chr16 1 CH_mdo_429 2 2 0.000113763
Medicago truncatula chr1 1 CH_mtr_577 2 3 0.000123256
Nelumbo nucifera chr1 1 CH_nnu_271 2 3 0.0000436015
Nicotiana tabacum Nitab4.5_0000090 1 CH_nta_32 3 4 0.0000000722405
Olea europaea chr22 1 CH_oeu_215 2 2 0.000160137
Oryza sativa ssp. japonica chr10 1 CH_osa_302 2 2 0.000316874
Petunia axillaris Peaxi162Scf00316 1 CH_pax_29 4 5 0.00000000000522419
Prunus persica Pp01 1 CH_ppe_315 2 2 0.0000745962
Pisum sativum chr6LG2 1 CH_psa_314 2 4 0.000312965
Papaver somniferum NW_020627707.1 1 CH_pso_565 2 2 0.000337849
Populus trichocarpa Chr08 1 CH_ptr_357 2 2 0.0001734
Phaseolus vulgaris Chr07 1 CH_pvu_330 2 3 0.00022041
Quercus lobata 6 1 CH_qlo_858 2 4 0.000309757
Rhododendron simsii chr04 1 CH_rsi_321 2 2 0.0000645307
Striga asiatica scaffold191 1 CH_sas_89 2 2 0.000187611
Solanum lycopersicum SL4.0ch09 1 CH_sly_123 3 3 0.00000000516764
Schrenkiella parvula ch7-4 1 CH_spa_210 2 2 0.000236202
Solanum pennellii Spenn-ch09 1 CH_spe_98 3 3 0.00000000296764
Solanum tuberosum ST4.03ch09 1 CH_stu_136 3 3 0.0000000157569
Trochodendron aralioides group17 1 CH_tar_415 2 2 0.00036022
Theobroma cacao Chromosome_4 1 CH_tca_274 2 2 0.0000732386
Tripterygium wilfordii NC_052232.1 1 CH_twi_206 2 2 0.000167252
Vigna mungo CM024071.1 1 CH_vmu_259 2 3 0.000193836
Vitis vinifera chr5 1 CH_vvi_251 2 2 0.000076063
Actinidia chinensis Lachesis_group3 2 CH_ach_171 2 2 0.000325928
Avicennia marina ScioBoG_12795_HRSCAF_12848 2 CH_ama_78 2 2 0.000258665
Aquilegia oxysepala CHR02 2 CH_aox_139 2 2 0.0000801989
Amborella trichopoda AmTr_v1.0_scaffold00002 2 CH_atr_159 2 2 0.0000794407
Camellia sinensis var. sinensis Chr9 2 CH_camsi_716 2 2 0.000275128
Cannabis sativa NC_044376.1 2 CH_cansat_209 2 2 0.0000656642
Capsicum annuum PGAv.1.6.scaffold1437 2 CH_can_328 2 2 0.000247831
Cicer arietinum L. Ca_LG4_v3 2 CH_car_202 2 3 0.000233481
Coffea canephora chr3 2 CH_ccan_207 2 7 0.0000638831
Citrus clementina scaffold_9 2 CH_ccl_278 2 2 0.0000820311
Carya illinoinensis Chr02 2 CH_cil_408 2 2 0.000185948
Carica papaya supercontig_44 2 CH_cpa_153 2 2 0.0000950661
Daucus carota DCARv2_Chr1 2 CH_dca_276 2 2 0.000191333
Durio zibethinus NW_019167904.1 2 CH_dzi_223 2 2 0.000139047
Eucalyptus grandis Chr02 2 CH_egr_511 3 6 0.00000102744
Erythranthe guttata scaffold_7 2 CH_egut_274 2 2 0.0000728147
Fragaria vesca Fvb4 2 CH_fve_254 2 2 0.0000589102
Glycine max Gm20 2 CH_gma_417 2 2 0.000227734
Glycine max Gm10 2 CH_gma_576 2 3 0.000683172
Lonicera japonica GWHAAZE00000006 2 CH_lonja_525 2 2 0.000359324
Malus domestica Chr16 2 CH_mdo_429 2 2 0.000113763
Nelumbo nucifera chr1 2 CH_nnu_271 2 3 0.0000436015
Nicotiana tabacum Nitab4.5_0000090 2 CH_nta_32 3 4 0.0000000722405
Olea europaea chr22 2 CH_oeu_215 2 2 0.000160137
Oryza sativa ssp. japonica chr10 2 CH_osa_302 2 2 0.000316874
Petunia axillaris Peaxi162Scf00316 2 CH_pax_29 4 5 0.00000000000522419
Prunus persica Pp01 2 CH_ppe_315 2 2 0.0000745962
Pisum sativum chr6LG2 2 CH_psa_314 2 4 0.000312965
Papaver somniferum NW_020627707.1 2 CH_pso_565 2 2 0.000337849
Populus trichocarpa Chr08 2 CH_ptr_357 2 2 0.0001734
Phaseolus vulgaris Chr07 2 CH_pvu_330 2 3 0.00022041
Quercus lobata 6 2 CH_qlo_858 2 4 0.000309757
Rhododendron simsii chr04 2 CH_rsi_321 2 2 0.0000645307
Striga asiatica scaffold191 2 CH_sas_89 2 2 0.000187611
Solanum lycopersicum SL4.0ch09 2 CH_sly_123 3 3 0.00000000516764
Schrenkiella parvula ch7-4 2 CH_spa_210 2 2 0.000236202
Solanum pennellii Spenn-ch09 2 CH_spe_98 3 3 0.00000000296764
Solanum tuberosum ST4.03ch09 2 CH_stu_136 3 3 0.0000000157569
Trochodendron aralioides group17 2 CH_tar_415 2 2 0.00036022
Theobroma cacao Chromosome_4 2 CH_tca_274 2 2 0.0000732386
Tripterygium wilfordii NC_052232.1 2 CH_twi_206 2 2 0.000167252
Vigna mungo CM024071.1 2 CH_vmu_259 2 3 0.000193836
Vitis vinifera chr5 2 CH_vvi_251 2 2 0.000076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001