Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.L-homocysteine S-methyltransferase activities.methyl-tetrahydrofolate-dependent methionine synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Citrus clementina scaffold_3 1 CH_ccl_466 2 3 0.000738229
Eucalyptus grandis Chr11 1 CH_egr_114 6 7 9.0874e-18
Lactuca sativa Lsat_1_v8_lg_2 1 CH_lsa_440 2 2 0.000308404
Magnolia biondii Chr11 1 CH_mbi_670 2 3 0.00087414
Oryza sativa ssp. japonica chr12 1 CH_osa_249 2 4 0.000158433
Petunia axillaris Peaxi162Scf00163 1 CH_pax_328 2 3 0.000633164
Striga asiatica scaffold41 1 CH_sas_123 2 3 0.000562805
Sechium edule LG02 1 CH_sed_326 2 2 0.000713419
Sechium edule LG12 1 CH_sed_327 2 2 0.000713419
Sequoiadendron giganteum chr2 1 CH_sgi_448 3 3 0.0000000142393
Trochodendron aralioides group13 1 CH_tar_414 2 2 0.00036022
Tripterygium wilfordii NC_052253.1 1 CH_twi_274 2 2 0.000557507
Tripterygium wilfordii NC_052238.1 1 CH_twi_275 2 2 0.000557507
Citrus clementina scaffold_3 2 CH_ccl_466 2 3 0.000738229
Eucalyptus grandis Chr11 2 CH_egr_114 6 7 9.0874e-18
Lactuca sativa Lsat_1_v8_lg_2 2 CH_lsa_440 2 2 0.000308404
Magnolia biondii Chr11 2 CH_mbi_670 2 3 0.00087414
Oryza sativa ssp. japonica chr12 2 CH_osa_249 2 4 0.000158433
Petunia axillaris Peaxi162Scf00163 2 CH_pax_328 2 3 0.000633164
Striga asiatica scaffold41 2 CH_sas_123 2 3 0.000562805
Sechium edule LG02 2 CH_sed_326 2 2 0.000713419
Sechium edule LG12 2 CH_sed_327 2 2 0.000713419
Sequoiadendron giganteum chr2 2 CH_sgi_448 3 3 0.0000000142393
Trochodendron aralioides group13 2 CH_tar_414 2 2 0.00036022
Tripterygium wilfordii NC_052253.1 2 CH_twi_274 2 2 0.000557507
Tripterygium wilfordii NC_052238.1 2 CH_twi_275 2 2 0.000557507

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001