Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Corylus avellana 9 1 CH_cav_133 5 14 0.000000493926
Lupinus albus Lalb_Chr09 1 CH_lal_387 3 4 0.00068773
Medicago truncatula chr4 1 CH_mtr_649 3 4 0.000198375
Prunus persica Pp08 1 CH_ppe_380 5 43 0.000205491
Corylus avellana 9 2 CH_cav_133 5 14 0.000000493926
Lupinus albus Lalb_Chr09 2 CH_lal_387 3 4 0.00068773
Prunus persica Pp08 2 CH_ppe_380 5 43 0.000205491

Available child term results

Ontology identifier Description Number of clusters
4.1.2.2.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.aspartate-semialdehyde dehydrogenase 9
4.1.2.2.3.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.hydroxy-tetrahydrodihydrodipicolinate synthase 20
4.1.2.2.3.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.hydroxy-tetrahydrodihydrodipicolinate reductase 2
4.1.2.2.3.3 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.LL-diaminopimelate aminotransferase 4
4.1.2.2.3.4 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.diaminopimelate epimerase 6
4.1.2.2.3.5 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.diaminopimelate decarboxylase 16
4.1.2.2.4 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.bifunctional homoserine dehydrogenase and aspartate kinase 22
4.1.2.2.5 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.homoserine kinase 8
4.1.2.2.6 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine 6
4.1.2.2.6.1.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.transsulfuration pathway.cystathionine gamma-synthase 14
4.1.2.2.6.1.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.transsulfuration pathway.cystathionine beta-lyase 6
4.1.2.2.6.2.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.L-homocysteine S-methyltransferase activities.methyl-tetrahydrofolate-dependent methionine synthase 26
4.1.2.2.6.3 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.S-methylmethionine cycle 2
4.1.2.2.6.3.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.S-methylmethionine cycle.homocysteine S-methyltransferase 4
4.1.2.2.6.3.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.S-methylmethionine cycle.methionine S-methyltransferase 14
4.1.2.2.6.4 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway 2
4.1.2.2.6.4.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.methylthioadenosine nucleosidase (MTN) 23
4.1.2.2.6.4.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.methylthioribose kinase (MTK) 47
4.1.2.2.6.4.3 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.methylthioribose-1-phosphate isomerase (MTI) 8
4.1.2.2.6.4.4 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.trifunctional methylthioribulose-1-phosphate dehydratase/enolase/phosphatase (DEP) 20
4.1.2.2.6.4.5 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.acireductone dioxygenase (ARD) 86
4.1.2.2.7.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.threonine.threonine synthase 3
4.1.2.2.8.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.threonine reactive imine intermediate deaminase (RidA) 20
4.1.2.2.8.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.methionine gamma-lyase 12
4.1.2.2.8.3.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.acetolactate synthase complex.catalytic subunit 21
4.1.2.2.8.3.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.acetolactate synthase complex.regulatory subunit 20
4.1.2.2.8.4 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.ketol-acid reductoisomerase 14
4.1.2.2.8.5 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.dihydroxy-acid dehydratase 9
4.1.2.2.8.6 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.valine/leucine/isoleucine aminotransferase 68

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001