Functional clusters

Information

  • Type MapMan
  • Description Amino acid metabolism

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Petunia axillaris Peaxi162Scf00152 1 CH_pax_162 5 8 0.0000312477
Petunia axillaris Peaxi162Scf00152 2 CH_pax_162 5 8 0.0000312477

Available child term results

Ontology identifier Description Number of clusters
4.1.1.1.1.1 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.ornithine.N-acetylglutamate synthase 12
4.1.1.1.1.2 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.ornithine.N-acetylglutamate kinase 6
4.1.1.1.1.3 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.ornithine.N-acetylglutamate-5-phosphate reductase 6
4.1.1.1.1.4 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.ornithine.N2-acetylornithine aminotransferase 3
4.1.1.1.1.5 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.ornithine.N2-acetylornithine:glutamate acetyltransferase 6
4.1.1.1.1.6 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.ornithine.N2-acetylornithine deacetylase 14
4.1.1.1.2.1.1 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.arginine.carbamoyl phosphate synthetase heterodimer.large subunit 2
4.1.1.1.2.1.2 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.arginine.carbamoyl phosphate synthetase heterodimer.small subunit 8
4.1.1.1.2.2 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.arginine.ornithine carbamoyltransferase 4
4.1.1.1.2.3 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.arginine.argininosuccinate synthetase 14
4.1.1.1.2.4 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.arginine.argininosuccinate lyase 4
4.1.1.1.3.1 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.gamma-aminobutyrate (GABA).glutamate decarboxylase 48
4.1.1.1.4.1.1 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.proline.main pathway.pyrroline-5-carboxylate synthetase 23
4.1.1.1.4.1.2 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.proline.main pathway.pyrroline-5-carboxylate reductase 14
4.1.1.1.4.2.2 Amino acid metabolism.biosynthesis.glutamate family.glutamate-derived amino acids.proline.alternative pathway.ornithine aminotransferase 8
4.1.1.2.1 Amino acid metabolism.biosynthesis.glutamate family.histidine.ribose-phosphate diphosphokinase 7
4.1.1.2.2 Amino acid metabolism.biosynthesis.glutamate family.histidine.ATP phosphoribosyl transferase 11
4.1.1.2.3 Amino acid metabolism.biosynthesis.glutamate family.histidine.bifunctional phosphoribosyl-ATP diphosphatase and phosphoribosyl-AMP cyclohydrolase 12
4.1.1.2.4 Amino acid metabolism.biosynthesis.glutamate family.histidine.phosphoribosyl-formimino-AICAR-phosphate isomerase 14
4.1.1.2.5 Amino acid metabolism.biosynthesis.glutamate family.histidine.imidazoleglycerol-phosphate synthase 6
4.1.1.2.6 Amino acid metabolism.biosynthesis.glutamate family.histidine.imidazoleglycerol-phosphate dehydratase 10
4.1.1.2.7 Amino acid metabolism.biosynthesis.glutamate family.histidine.histidinol-phosphate aminotransferase 6
4.1.1.2.8 Amino acid metabolism.biosynthesis.glutamate family.histidine.histidinol-phosphate phosphatase 6
4.1.1.2.9 Amino acid metabolism.biosynthesis.glutamate family.histidine.histidinol dehydrogenase 8
4.1.2.1.1 Amino acid metabolism.biosynthesis.aspartate family.asparagine.glutamine-dependent asparagine synthetase 20
4.1.2.1.2 Amino acid metabolism.biosynthesis.aspartate family.asparagine.L-asparaginase 29
4.1.2.1.3 Amino acid metabolism.biosynthesis.aspartate family.asparagine.asparagine aminotransaminase 4
4.1.2.1.4 Amino acid metabolism.biosynthesis.aspartate family.asparagine.omega-amidase 10
4.1.2.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids 7
4.1.2.2.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.aspartate-semialdehyde dehydrogenase 9
4.1.2.2.3.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.hydroxy-tetrahydrodihydrodipicolinate synthase 20
4.1.2.2.3.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.hydroxy-tetrahydrodihydrodipicolinate reductase 2
4.1.2.2.3.3 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.LL-diaminopimelate aminotransferase 4
4.1.2.2.3.4 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.diaminopimelate epimerase 6
4.1.2.2.3.5 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.lysine.diaminopimelate decarboxylase 16
4.1.2.2.4 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.bifunctional homoserine dehydrogenase and aspartate kinase 22
4.1.2.2.5 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.homoserine kinase 8
4.1.2.2.6 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine 6
4.1.2.2.6.1.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.transsulfuration pathway.cystathionine gamma-synthase 14
4.1.2.2.6.1.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.transsulfuration pathway.cystathionine beta-lyase 6
4.1.2.2.6.2.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.L-homocysteine S-methyltransferase activities.methyl-tetrahydrofolate-dependent methionine synthase 26
4.1.2.2.6.3 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.S-methylmethionine cycle 2
4.1.2.2.6.3.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.S-methylmethionine cycle.homocysteine S-methyltransferase 4
4.1.2.2.6.3.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.S-methylmethionine cycle.methionine S-methyltransferase 14
4.1.2.2.6.4 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway 2
4.1.2.2.6.4.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.methylthioadenosine nucleosidase (MTN) 23
4.1.2.2.6.4.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.methylthioribose kinase (MTK) 47
4.1.2.2.6.4.3 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.methylthioribose-1-phosphate isomerase (MTI) 8
4.1.2.2.6.4.4 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.trifunctional methylthioribulose-1-phosphate dehydratase/enolase/phosphatase (DEP) 20
4.1.2.2.6.4.5 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.methionine.salvage pathway.acireductone dioxygenase (ARD) 86
4.1.2.2.7.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.threonine.threonine synthase 3
4.1.2.2.8.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.threonine reactive imine intermediate deaminase (RidA) 20
4.1.2.2.8.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.methionine gamma-lyase 12
4.1.2.2.8.3.1 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.acetolactate synthase complex.catalytic subunit 21
4.1.2.2.8.3.2 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.acetolactate synthase complex.regulatory subunit 20
4.1.2.2.8.4 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.ketol-acid reductoisomerase 14
4.1.2.2.8.5 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.dihydroxy-acid dehydratase 9
4.1.2.2.8.6 Amino acid metabolism.biosynthesis.aspartate family.aspartate-derived amino acids.isoleucine.valine/leucine/isoleucine aminotransferase 68
4.1.3.1.1 Amino acid metabolism.biosynthesis.pyruvate family.alanine.alanine aminotransferase 15
4.1.3.2 Amino acid metabolism.biosynthesis.pyruvate family.pyruvate-derived amino acids 2
4.1.3.2.5.1 Amino acid metabolism.biosynthesis.pyruvate family.pyruvate-derived amino acids.leucine.2-isopropylmalate synthase 11
4.1.3.2.5.2.1 Amino acid metabolism.biosynthesis.pyruvate family.pyruvate-derived amino acids.leucine.isopropylmalate isomerase heterodimer.large subunit 32
4.1.3.2.5.2.2 Amino acid metabolism.biosynthesis.pyruvate family.pyruvate-derived amino acids.leucine.isopropylmalate isomerase heterodimer.small subunit 29
4.1.3.2.5.3 Amino acid metabolism.biosynthesis.pyruvate family.pyruvate-derived amino acids.leucine.3-isopropylmalate dehydrogenase 24
4.1.4 Amino acid metabolism.biosynthesis.serine family 8
4.1.4.1.1 Amino acid metabolism.biosynthesis.serine family.non-photorespiratory serine.phosphoglycerate dehydrogenase 10
4.1.4.1.2 Amino acid metabolism.biosynthesis.serine family.non-photorespiratory serine.phosphoserine aminotransferase 8
4.1.4.1.3 Amino acid metabolism.biosynthesis.serine family.non-photorespiratory serine.phosphoserine phosphatase 4
4.1.4.2.1 Amino acid metabolism.biosynthesis.serine family.cysteine.serine O-acetyltransferase (SAT) 16
4.1.4.2.2 Amino acid metabolism.biosynthesis.serine family.cysteine.O-acetylserine sulfydrylase (OASS) 19
4.1.4.3.1 Amino acid metabolism.biosynthesis.serine family.glycine.serine hydroxymethyltransferase (SHM) 8
4.1.5.1.1 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 17
4.1.5.1.2 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.3-dehydroquinate synthase 14
4.1.5.1.3 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.3-dehydroquinate dehydratase and shikimate dehydrogenase 63
4.1.5.1.4 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.shikimate kinase 10
4.1.5.1.5 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.5-enolpyruvyl-shikimate 3-phosphate (EPSP) synthase 9
4.1.5.1.6 Amino acid metabolism.biosynthesis.shikimate family.shikimate pathway.chorismate synthase 16
4.1.5.2 Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine 4
4.1.5.2.1 Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.chorismate mutase 5
4.1.5.2.2 Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.prephenate aminotransferase (PPA-AT) 13
4.1.5.2.3 Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.arogenate dehydrogenase (ADH) 34
4.1.5.2.4 Amino acid metabolism.biosynthesis.shikimate family.phenylalanine and tyrosine.arogenate dehydratase (ADT) 20
4.1.5.3.1.1 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.anthranilate synthase heterodimer.subunit alpha 18
4.1.5.3.1.2 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.anthranilate synthase heterodimer.subunit beta 10
4.1.5.3.2 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.anthranilate phosphoribosyltransferase 2
4.1.5.3.3 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.phosphoribosyanthranilate isomerase 6
4.1.5.3.4 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.indole-3-glycerol phosphate synthase 12
4.1.5.3.5.1 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.tryptophan synthase heterodimer.subunit alpha 18
4.1.5.3.5.2 Amino acid metabolism.biosynthesis.shikimate family.tryptophan.tryptophan synthase heterodimer.subunit beta 7
4.2.1 Amino acid metabolism.degradation.arginine 4
4.2.1.1 Amino acid metabolism.degradation.arginine.arginase 30
4.2.1.2 Amino acid metabolism.degradation.arginine.urease 8
4.2.1.3 Amino acid metabolism.degradation.arginine.urease accessory protein activities 2
4.2.1.3.1 Amino acid metabolism.degradation.arginine.urease accessory protein activities.urease accessory protein (ureD) 16
4.2.1.3.2 Amino acid metabolism.degradation.arginine.urease accessory protein activities.urease accessory protein (ureF) 7
4.2.1.3.3 Amino acid metabolism.degradation.arginine.urease accessory protein activities.urease accessory protein (ureG) 16
4.2.2.1 Amino acid metabolism.degradation.gamma-aminobutyrate (GABA).gamma-aminobutyric acid pyruvate transaminase 42
4.2.2.2.1 Amino acid metabolism.degradation.gamma-aminobutyrate (GABA).succinate formation.NAD-dependent succinic semialdehyde dehydrogenase 6
4.2.2.3.1 Amino acid metabolism.degradation.gamma-aminobutyrate (GABA).gamma-hydroxybutyrate formation.bifunctional gamma-hydroxybutyrate dehydrogenase and glyoxylate reductase 14
4.2.3.1 Amino acid metabolism.degradation.proline.proline dehydrogenase 21
4.2.3.2 Amino acid metabolism.degradation.proline.delta-1-pyrroline-5-carboxylate dehydrogenase 6
4.2.4.1 Amino acid metabolism.degradation.lysine.bifunctional lysine ketoglutarate reductase and saccharopine dehydrogenase 35
4.2.4.2 Amino acid metabolism.degradation.lysine.piperideine-6-carboxylate dehydrogenase 12
4.2.4.3 Amino acid metabolism.degradation.lysine.D-2-hydroxyglutarate synthase 24
4.2.4.4 Amino acid metabolism.degradation.lysine.D-2-hydroxyglutarate dehydrogenase 11
4.2.5.1 Amino acid metabolism.degradation.threonine.threonine aldolase 23
4.2.5.2 Amino acid metabolism.degradation.threonine.threonine dehydratase 11
4.2.6.2 Amino acid metabolism.degradation.cysteine.sulfur dioxygenase 8
4.2.6.3 Amino acid metabolism.degradation.cysteine.cysteine desulfhydrase 14
4.2.7 Amino acid metabolism.degradation.branched-chain amino acid 2
4.2.7.2.1.1 Amino acid metabolism.degradation.branched-chain amino acid.branched-chain alpha-keto acid dehydrogenase complex.E1 2-oxoisovalerate dehydrogenase subcomplex.subunit alpha 18
4.2.7.2.3 Amino acid metabolism.degradation.branched-chain amino acid.branched-chain alpha-keto acid dehydrogenase complex.dihydrolipoamide dehydrogenase component E3 4
4.2.7.3 Amino acid metabolism.degradation.branched-chain amino acid.isovaleryl-CoA-dehydrogenase (IVDH) 10
4.2.7.4 Amino acid metabolism.degradation.branched-chain amino acid.3-hydroxyisobutyryl-CoA hydrolase (CHY) 37
4.2.7.5.1.1 Amino acid metabolism.degradation.branched-chain amino acid.leucine.methylcrotonoyl-CoA carboxylase heterodimer.subunit alpha 3
4.2.7.5.1.2 Amino acid metabolism.degradation.branched-chain amino acid.leucine.methylcrotonoyl-CoA carboxylase heterodimer.subunit beta 6
4.2.7.5.3 Amino acid metabolism.degradation.branched-chain amino acid.leucine.methylglutaconyl-CoA hydratase 8
4.2.7.6.1 Amino acid metabolism.degradation.branched-chain amino acid.valine.3-hydroxyisobutyrate dehydrogenase 4
4.2.7.6.2 Amino acid metabolism.degradation.branched-chain amino acid.valine.methylmalonate-semialdehyde dehydrogenase 53
4.2.7.8.1.1 Amino acid metabolism.degradation.branched-chain amino acid.acyl-CoA dehydrogenase oxidation.ETF electron transfer flavoprotein heterodimer.subunit alpha 14
4.2.7.8.1.2 Amino acid metabolism.degradation.branched-chain amino acid.acyl-CoA dehydrogenase oxidation.ETF electron transfer flavoprotein heterodimer.subunit beta 2
4.2.7.8.2 Amino acid metabolism.degradation.branched-chain amino acid.acyl-CoA dehydrogenase oxidation.electron transfer flavoprotein-ubiquinone oxidoreductase (ETF-QO) 12
4.2.8 Amino acid metabolism.degradation.aromatic amino acid 2
4.2.8.1 Amino acid metabolism.degradation.aromatic amino acid.aromatic-amino-acid aminotransferase 4
4.2.8.3 Amino acid metabolism.degradation.aromatic amino acid.aromatic amino acid decarboxylase 79
4.2.8.4 Amino acid metabolism.degradation.aromatic amino acid.tyrosine 4
4.2.8.4.1 Amino acid metabolism.degradation.aromatic amino acid.tyrosine.tyrosine aminotransferase (TAT) 113
4.2.8.4.2 Amino acid metabolism.degradation.aromatic amino acid.tyrosine.homogentisate dioxygenase 7
4.2.8.4.3 Amino acid metabolism.degradation.aromatic amino acid.tyrosine.maleylacetoacetate isomerase 63
4.2.8.4.4 Amino acid metabolism.degradation.aromatic amino acid.tyrosine.fumarylacetoacetate hydrolase (FAH) 2
4.3.1 Amino acid metabolism.amino acid racemization.PLP-dependent serine racemase 10
4.3.2 Amino acid metabolism.amino acid racemization.PLP-independent amino acid racemase 100

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001