Functional clusters

Information

  • Type MapMan
  • Description Clade-specific metabolism.Brassicaceae.glucosinolate degradation.nitrilase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_5 1 CH_aly_99 3 3 0.0000000261404
Arabidopsis thaliana Chr3 1 CH_ath_130 3 6 0.0000000984871
Camellia sinensis var. sinensis Chr13 1 CH_camsi_668 2 2 0.000137564
Carya illinoinensis Chr13 1 CH_cil_439 2 2 0.000185948
Capsella rubella scaffold_5 1 CH_cru_384 2 2 0.000438693
Davidia involucrata GWHABJS00000007 1 CH_din_312 2 3 0.000150034
Eutrema salsugineum scaffold_16 1 CH_esa_287 2 2 0.000456899
Lotus japonicus chr3 1 CH_lja_90 3 3 0.00000000767031
Medicago truncatula chr4 1 CH_mtr_539 2 2 0.0000410863
Nicotiana tabacum Nitab4.5_0001135 1 CH_nta_113 2 2 0.000109727
Oryza sativa ssp. japonica chr02 1 CH_osa_218 2 2 0.0000528123
Punica granatum NC_045132.1 1 CH_pgr_222 2 2 0.0000750356
Papaver somniferum NC_039366.1 1 CH_pso_488 2 2 0.00013514
Papaver somniferum NC_039368.1 1 CH_pso_489 2 2 0.00013514
Quercus lobata 1 1 CH_qlo_364 3 3 0.0000000159937
Salvia bowleyana GWHASIU00000006 1 CH_sbo_344 2 2 0.000136494
Simmondsia chinensis GWHAASQ00000012 1 CH_sci_269 2 2 0.000510856
Simmondsia chinensis GWHAASQ00000006 1 CH_sci_270 2 2 0.000510856
Schrenkiella parvula ch5-2 1 CH_spa_265 2 2 0.000472404
Selenicereus undatus Scaffold_33675 1 CH_sun_144 2 2 0.0000726639
Trochodendron aralioides group2 1 CH_tar_381 2 2 0.00018011
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_268 2 2 0.0000929238
Vitis vinifera chr2 1 CH_vvi_10 10 17 7.75784e-28
Arabidopsis lyrata scaffold_5 2 CH_aly_99 3 3 0.0000000261404
Arabidopsis thaliana Chr3 2 CH_ath_130 3 6 0.0000000984871
Camellia sinensis var. sinensis Chr13 2 CH_camsi_668 2 2 0.000137564
Carya illinoinensis Chr13 2 CH_cil_439 2 2 0.000185948
Capsella rubella scaffold_5 2 CH_cru_384 2 2 0.000438693
Davidia involucrata GWHABJS00000007 2 CH_din_312 2 3 0.000150034
Eucalyptus grandis Chr10 2 CH_egr_794 2 2 0.000175582
Eutrema salsugineum scaffold_16 2 CH_esa_287 2 2 0.000456899
Lotus japonicus chr3 2 CH_lja_90 3 3 0.00000000767031
Nicotiana tabacum Nitab4.5_0001135 2 CH_nta_113 2 2 0.000109727
Oryza sativa ssp. japonica chr02 2 CH_osa_218 2 2 0.0000528123
Punica granatum NC_045132.1 2 CH_pgr_222 2 2 0.0000750356
Papaver somniferum NC_039366.1 2 CH_pso_488 2 2 0.00013514
Papaver somniferum NC_039368.1 2 CH_pso_489 2 2 0.00013514
Quercus lobata 1 2 CH_qlo_364 3 3 0.0000000159937
Salvia bowleyana GWHASIU00000006 2 CH_sbo_344 2 2 0.000136494
Simmondsia chinensis GWHAASQ00000012 2 CH_sci_269 2 2 0.000510856
Simmondsia chinensis GWHAASQ00000006 2 CH_sci_270 2 2 0.000510856
Schrenkiella parvula ch5-2 2 CH_spa_265 2 2 0.000472404
Selenicereus undatus Scaffold_33675 2 CH_sun_144 2 2 0.0000726639
Trochodendron aralioides group2 2 CH_tar_381 2 2 0.00018011
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_268 2 2 0.0000929238
Vitis vinifera chr2 2 CH_vvi_10 10 17 7.75784e-28

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001