Functional clusters

Information

  • Type MapMan
  • Description Clade-specific metabolism.Brassicaceae.glucosinolate biosynthesis.benzenic and indolic core structure.glutathione S-transferase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr6 1 CH_acertr_311 2 2 0.000070497
Arabidopsis lyrata scaffold_4 1 CH_aly_231 2 2 0.0000660044
Brassica carinata ChrC01 1 CH_bca_861 2 2 0.000320646
Brassica carinata ChrB01 1 CH_bca_862 2 2 0.000320646
Brassica oleracea C3 1 CH_bol_276 2 2 0.0000980584
Brassica rapa A03 1 CH_bra_230 2 2 0.000128794
Cicer arietinum L. Ca_LG2_v3 1 CH_car_226 2 2 0.00023349
Eucalyptus grandis Chr11 1 CH_egr_62 7 8 2.53324e-23
Eutrema salsugineum scaffold_10 1 CH_esa_175 2 2 0.0000761499
Glycine max Gm08 1 CH_gma_509 2 2 0.000379557
Manihot esculenta Chromosome02 1 CH_mes_418 2 2 0.000366379
Prunus persica Pp03 1 CH_ppe_151 3 3 0.00000000834721
Pisum sativum chr5LG3 1 CH_psa_285 2 2 0.00015649
Phaseolus vulgaris Chr08 1 CH_pvu_169 3 3 0.000000453468
Phaseolus vulgaris Chr06 1 CH_pvu_223 4 43 0.0000102183
Schrenkiella parvula ch4-6 1 CH_spa_206 2 3 0.000236193
Theobroma cacao Chromosome_1 1 CH_tca_287 2 2 0.0000732386
Vitis vinifera chr12 1 CH_vvi_271 2 2 0.000076063
Acer truncatum chr6 2 CH_acertr_311 2 2 0.000070497
Arabidopsis lyrata scaffold_4 2 CH_aly_231 2 2 0.0000660044
Brassica carinata ChrC01 2 CH_bca_861 2 2 0.000320646
Brassica carinata ChrB01 2 CH_bca_862 2 2 0.000320646
Brassica oleracea C3 2 CH_bol_276 2 2 0.0000980584
Brassica rapa A03 2 CH_bra_230 2 2 0.000128794
Cicer arietinum L. Ca_LG2_v3 2 CH_car_226 2 2 0.00023349
Eucalyptus grandis Chr11 2 CH_egr_62 7 8 2.53324e-23
Eutrema salsugineum scaffold_10 2 CH_esa_175 2 2 0.0000761499
Glycine max Gm08 2 CH_gma_509 2 2 0.000379557
Manihot esculenta Chromosome02 2 CH_mes_418 2 2 0.000366379
Prunus persica Pp03 2 CH_ppe_151 3 3 0.00000000834721
Pisum sativum chr5LG3 2 CH_psa_285 2 2 0.00015649
Phaseolus vulgaris Chr08 2 CH_pvu_169 3 3 0.000000453468
Phaseolus vulgaris Chr06 2 CH_pvu_223 4 43 0.0000102183
Schrenkiella parvula ch4-6 2 CH_spa_206 2 3 0.000236193
Theobroma cacao Chromosome_1 2 CH_tca_287 2 2 0.0000732386
Vitis vinifera chr12 2 CH_vvi_271 2 2 0.000076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001