Functional clusters
Information
- Type MapMan
- Description Clade-specific metabolism.Brassicaceae.glucosinolate biosynthesis.secondary modifications.benzoyl-CoA ligase (BZO1)
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis thaliana | Chr1 | 1 | CH_ath_251 | 3 | 75 | 0.0000830498 |
Capsicum annuum | PGAv.1.6.scaffold1681 | 1 | CH_can_321 | 2 | 3 | 0.000247821 |
Capsella rubella | scaffold_2 | 1 | CH_cru_26 | 5 | 7 | 0.00000000000000450174 |
Fragaria x ananassa | Fvb1-4 | 1 | CH_fan_590 | 2 | 2 | 0.00066613 |
Fragaria x ananassa | Fvb1-1 | 1 | CH_fan_591 | 2 | 2 | 0.00066613 |
Fragaria x ananassa | Fvb1-1 | 1 | CH_fan_592 | 2 | 2 | 0.00066613 |
Fragaria vesca | Fvb1 | 1 | CH_fve_270 | 2 | 2 | 0.0000589102 |
Helianthus annuus | HanXRQChr16 | 1 | CH_han_642 | 2 | 2 | 0.000386429 |
Lactuca sativa | Lsat_1_v8_lg_3 | 1 | CH_lsa_259 | 3 | 12 | 0.00000348616 |
Populus trichocarpa | Chr06 | 1 | CH_ptr_543 | 2 | 2 | 0.000867002 |
Rosa chinensis | RcHm_v2.0_Chr3 | 1 | CH_rch_481 | 2 | 2 | 0.0000398653 |
Salix brachista | GWHAAZH00000017 | 1 | CH_sbr_407 | 3 | 36 | 0.000847693 |
Schrenkiella parvula | ch5-5 | 1 | CH_spa_282 | 2 | 5 | 0.000787247 |
Solanum pennellii | Spenn-ch02 | 1 | CH_spe_103 | 3 | 3 | 0.00000000296764 |
Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_246 | 2 | 2 | 0.0000929238 |
Arabidopsis thaliana | Chr1 | 2 | CH_ath_251 | 3 | 75 | 0.0000830498 |
Capsicum annuum | PGAv.1.6.scaffold1681 | 2 | CH_can_321 | 2 | 3 | 0.000247821 |
Capsella rubella | scaffold_2 | 2 | CH_cru_26 | 5 | 7 | 0.00000000000000450174 |
Eucalyptus grandis | Chr06 | 2 | CH_egr_376 | 4 | 31 | 0.0000000189113 |
Fragaria x ananassa | Fvb1-4 | 2 | CH_fan_590 | 2 | 2 | 0.00066613 |
Fragaria x ananassa | Fvb1-1 | 2 | CH_fan_591 | 2 | 2 | 0.00066613 |
Fragaria x ananassa | Fvb1-1 | 2 | CH_fan_592 | 2 | 2 | 0.00066613 |
Fragaria vesca | Fvb1 | 2 | CH_fve_270 | 2 | 2 | 0.0000589102 |
Helianthus annuus | HanXRQChr16 | 2 | CH_han_642 | 2 | 2 | 0.000386429 |
Lotus japonicus | chr6 | 2 | CH_lja_269 | 2 | 2 | 0.0000715077 |
Lactuca sativa | Lsat_1_v8_lg_3 | 2 | CH_lsa_259 | 3 | 12 | 0.00000348616 |
Populus trichocarpa | Chr06 | 2 | CH_ptr_543 | 2 | 2 | 0.000867002 |
Rosa chinensis | RcHm_v2.0_Chr3 | 2 | CH_rch_481 | 2 | 2 | 0.0000398653 |
Salix brachista | GWHAAZH00000017 | 2 | CH_sbr_407 | 3 | 36 | 0.000847693 |
Schrenkiella parvula | ch5-5 | 2 | CH_spa_282 | 2 | 5 | 0.000787247 |
Solanum pennellii | Spenn-ch02 | 2 | CH_spe_103 | 3 | 3 | 0.00000000296764 |
Vaccinium macrocarpon | chr10_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_246 | 2 | 2 | 0.0000929238 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |