Functional clusters

Information

  • Type MapMan
  • Description Clade-specific metabolism.Brassicaceae.glucosinolate biosynthesis.secondary modifications.glucosinolate 2-oxoglutarate-dependent dioxygenase (AOP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_6 1 CH_aly_314 2 2 0.000198013
Brassica carinata ChrB01 1 CH_bca_94 5 52 0.000000000227591
Brassica carinata ChrC01 1 CH_bca_991 2 2 0.00059854
Brassica napus A09 1 CH_bna_205 3 4 0.000000147645
Brassica napus C09 1 CH_bna_206 3 3 0.000000147645
Brassica napus C03 1 CH_bna_422 3 11 0.0000243461
Brassica oleracea C9 1 CH_bol_85 3 3 0.0000000320521
Brassica rapa A09 1 CH_bra_83 3 3 0.0000000552942
Cardamine hirsuta Chr8 1 CH_chi_30 5 7 0.00000000000000359556
Capsella rubella scaffold_6 1 CH_cru_267 2 2 0.0000731154
Eutrema salsugineum scaffold_3 1 CH_esa_174 2 2 0.0000761499
Schrenkiella parvula ch6-1 1 CH_spa_171 2 2 0.000078734
Arabidopsis lyrata scaffold_6 2 CH_aly_314 2 2 0.000198013
Brassica carinata ChrB01 2 CH_bca_94 5 52 0.000000000227591
Brassica carinata ChrC01 2 CH_bca_991 2 2 0.00059854
Brassica oleracea C9 2 CH_bol_85 3 3 0.0000000320521
Brassica rapa A09 2 CH_bra_83 3 3 0.0000000552942
Cardamine hirsuta Chr8 2 CH_chi_30 5 7 0.00000000000000359556
Capsella rubella scaffold_6 2 CH_cru_267 2 2 0.0000731154
Eutrema salsugineum scaffold_3 2 CH_esa_174 2 2 0.0000761499
Schrenkiella parvula ch6-1 2 CH_spa_171 2 2 0.000078734

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001