Functional clusters

Information

  • Type MapMan
  • Description Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.6-phosphogluconolactonase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-11 1 CH_aar_247 2 2 0.000547395
Acer truncatum chr12 1 CH_acertr_440 2 2 0.000211491
Arabidopsis lyrata scaffold_6 1 CH_aly_110 3 3 0.0000000653509
Amaranthus hybridus AmaHy_arrow1_Scaffold_7 1 CH_amhyb_211 2 2 0.000252525
Arabidopsis thaliana Chr5 1 CH_ath_119 3 4 0.0000000492455
Brassica carinata Contig686 1 CH_bca_10 7 11 7.88865e-20
Brassica carinata Contig469 1 CH_bca_82 4 4 0.0000000000896731
Brassica napus C07 1 CH_bna_39 5 9 0.000000000000224026
Brassica napus A06 1 CH_bna_76 4 5 0.0000000000958602
Brassica oleracea C7 1 CH_bol_13 7 12 2.50968e-20
Brassica rapa A06 1 CH_bra_30 5 8 0.000000000000179743
Beta vulgaris Chr3_EL10_PGA_scaffold7 1 CH_bvu_236 2 2 0.000248375
Camellia sinensis var. sinensis Chr7 1 CH_camsi_667 2 2 0.000137564
Coffea canephora chr2 1 CH_ccan_324 2 4 0.000459956
Carpinus fangiana Cfa06 1 CH_cfa_95 3 3 0.0000000344157
Cardamine hirsuta Chr6 1 CH_chi_118 3 3 0.000000071667
Cucumis melo chr09 1 CH_cme_287 2 3 0.000600367
Chenopodium quinoa C_Quinoa_Scaffold_1001 1 CH_cqu_620 2 2 0.000995025
Capsella rubella scaffold_6 1 CH_cru_116 3 3 0.0000000320764
Cucumis sativus L. chr5 1 CH_csa_272 2 2 0.000250428
Davidia involucrata GWHABJS00000004 1 CH_din_512 2 2 0.000750188
Davidia involucrata GWHABJS00000009 1 CH_din_513 2 2 0.000750188
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_464 2 2 0.000448722
Eutrema salsugineum scaffold_6 1 CH_esa_332 2 2 0.000761499
Helianthus annuus HanXRQChr03 1 CH_han_218 4 20 0.0000000586384
Lotus japonicus chr1 1 CH_lja_154 3 4 0.000000613553
Lactuca sativa Lsat_1_v8_lg_7 1 CH_lsa_462 2 2 0.000308404
Punica granatum NC_045128.1 1 CH_pgr_371 2 2 0.000750356
Populus trichocarpa Chr15 1 CH_ptr_292 3 13 0.0000501064
Phaseolus vulgaris Chr09 1 CH_pvu_122 3 3 0.0000000323906
Rhododendron simsii chr01 1 CH_rsi_175 4 13 0.0000000725284
Striga asiatica scaffold18 1 CH_sas_13 3 3 0.00000011733
Sequoiadendron giganteum HRSCAF_1 1 CH_sgi_1040 2 3 0.000146142
Schrenkiella parvula ch2-4 1 CH_spa_92 3 3 0.0000000929892
Trifolium pratense Tp57577_TGAC_v2_LG1 1 CH_tpr_102 3 3 0.000000171909
Vigna mungo CM024072.1 1 CH_vmu_305 2 2 0.000193842
Aethionema arabicum LG-11 2 CH_aar_247 2 2 0.000547395
Acer truncatum chr12 2 CH_acertr_440 2 2 0.000211491
Arabidopsis lyrata scaffold_6 2 CH_aly_110 3 3 0.0000000653509
Amaranthus hybridus AmaHy_arrow1_Scaffold_7 2 CH_amhyb_211 2 2 0.000252525
Arabidopsis thaliana Chr5 2 CH_ath_119 3 4 0.0000000492455
Brassica carinata Contig686 2 CH_bca_10 7 11 7.88865e-20
Brassica carinata Contig469 2 CH_bca_82 4 4 0.0000000000896731
Brassica oleracea C7 2 CH_bol_13 7 12 2.50968e-20
Brassica rapa A06 2 CH_bra_30 5 8 0.000000000000179743
Beta vulgaris Chr3_EL10_PGA_scaffold7 2 CH_bvu_236 2 2 0.000248375
Camellia sinensis var. sinensis Chr7 2 CH_camsi_667 2 2 0.000137564
Coffea canephora chr2 2 CH_ccan_324 2 4 0.000459956
Carpinus fangiana Cfa06 2 CH_cfa_95 3 3 0.0000000344157
Cardamine hirsuta Chr6 2 CH_chi_118 3 3 0.000000071667
Cucumis melo chr09 2 CH_cme_287 2 3 0.000600367
Chenopodium quinoa C_Quinoa_Scaffold_1001 2 CH_cqu_620 2 2 0.000995025
Capsella rubella scaffold_6 2 CH_cru_116 3 3 0.0000000320764
Cucumis sativus L. chr5 2 CH_csa_272 2 2 0.000250428
Davidia involucrata GWHABJS00000004 2 CH_din_512 2 2 0.000750188
Davidia involucrata GWHABJS00000009 2 CH_din_513 2 2 0.000750188
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_464 2 2 0.000448722
Eutrema salsugineum scaffold_6 2 CH_esa_332 2 2 0.000761499
Helianthus annuus HanXRQChr03 2 CH_han_218 4 20 0.0000000586384
Lotus japonicus chr1 2 CH_lja_154 3 4 0.000000613553
Lactuca sativa Lsat_1_v8_lg_7 2 CH_lsa_462 2 2 0.000308404
Punica granatum NC_045128.1 2 CH_pgr_371 2 2 0.000750356
Populus trichocarpa Chr15 2 CH_ptr_292 3 13 0.0000501064
Phaseolus vulgaris Chr09 2 CH_pvu_122 3 3 0.0000000323906
Rhododendron simsii chr01 2 CH_rsi_175 4 13 0.0000000725284
Striga asiatica scaffold18 2 CH_sas_13 3 3 0.00000011733
Sequoiadendron giganteum HRSCAF_1 2 CH_sgi_1040 2 3 0.000146142
Schrenkiella parvula ch2-4 2 CH_spa_92 3 3 0.0000000929892
Trifolium pratense Tp57577_TGAC_v2_LG1 2 CH_tpr_102 3 3 0.000000171909
Vigna mungo CM024072.1 2 CH_vmu_305 2 2 0.000193842

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001