Functional clusters

Information

  • Type MapMan
  • Description Carbohydrate metabolism.mannose metabolism.phosphosugar phosphatase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 1 CH_arhy_528 2 2 0.00017963
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 1 CH_arhy_529 2 2 0.00017963
Coffea canephora chr2 1 CH_ccan_166 2 2 0.0000127767
Cucumis melo chr06 1 CH_cme_253 2 2 0.000200133
Cucumis sativus L. chr3 1 CH_csa_278 2 2 0.000250428
Glycine max Gm11 1 CH_gma_392 2 2 0.000113867
Malus domestica Chr02 1 CH_mdo_219 3 4 0.000000172554
Olea europaea scaffold630 1 CH_oeu_332 2 2 0.000320273
Punica granatum NC_045127.1 1 CH_pgr_232 2 2 0.0000750356
Prunus persica Pp05 1 CH_ppe_476 2 2 0.000447577
Populus trichocarpa Chr01 1 CH_ptr_516 2 2 0.000578001
Phaseolus vulgaris Chr02 1 CH_pvu_311 2 2 0.0000734727
Sequoiadendron giganteum chr10 1 CH_sgi_579 3 12 0.000000782992
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_402 2 3 0.00083625
Vigna mungo CM024078.1 1 CH_vmu_367 2 2 0.000387685
Vigna mungo CM024074.1 1 CH_vmu_368 2 2 0.000387685
Vitis vinifera chr2 1 CH_vvi_361 2 2 0.000228189
Zea mays 9 1 CH_zma_202 2 2 0.000153394
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 2 CH_arhy_528 2 2 0.00017963
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 2 CH_arhy_529 2 2 0.00017963
Coffea canephora chr2 2 CH_ccan_166 2 2 0.0000127767
Cucumis melo chr06 2 CH_cme_253 2 2 0.000200133
Cucumis sativus L. chr3 2 CH_csa_278 2 2 0.000250428
Eucalyptus grandis Chr04 2 CH_egr_387 3 3 0.0000000205534
Glycine max Gm11 2 CH_gma_392 2 2 0.000113867
Lotus japonicus chr2 2 CH_lja_305 2 3 0.000214516
Malus domestica Chr02 2 CH_mdo_219 3 4 0.000000172554
Olea europaea scaffold630 2 CH_oeu_332 2 2 0.000320273
Punica granatum NC_045127.1 2 CH_pgr_232 2 2 0.0000750356
Prunus persica Pp05 2 CH_ppe_476 2 2 0.000447577
Populus trichocarpa Chr01 2 CH_ptr_516 2 2 0.000578001
Phaseolus vulgaris Chr02 2 CH_pvu_311 2 2 0.0000734727
Sequoiadendron giganteum chr10 2 CH_sgi_579 3 12 0.000000782992
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_402 2 3 0.00083625
Vigna mungo CM024078.1 2 CH_vmu_367 2 2 0.000387685
Vigna mungo CM024074.1 2 CH_vmu_368 2 2 0.000387685
Vitis vinifera chr2 2 CH_vvi_361 2 2 0.000228189
Zea mays 9 2 CH_zma_202 2 2 0.000153394

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001