Functional clusters

Information

  • Type MapMan
  • Description Carbohydrate metabolism.oligosaccharide metabolism.galactinol synthase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr2 1 CH_acertr_186 3 5 0.00000260852
Brassica carinata ChrC07 1 CH_bca_735 3 11 0.000150232
Beta vulgaris Chr4_EL10_PGA_scaffold1 1 CH_bvu_285 2 3 0.000745074
Camellia sinensis var. sinensis Chr3 1 CH_camsi_6 11 19 1.6532e-31
Coffea canephora chr2 1 CH_ccan_93 3 22 0.000000418953
Citrus clementina scaffold_9 1 CH_ccl_499 2 2 0.000820311
Carya illinoinensis Chr07 1 CH_cil_169 4 7 0.00000000524842
Daucus carota DCARv2_Chr1 1 CH_dca_60 4 6 0.000000000817032
Davidia involucrata GWHABJS00000002 1 CH_din_44 4 4 0.0000000000262717
Durio zibethinus NW_019167904.1 1 CH_dzi_411 2 2 0.000973326
Erigeron canadensis Conyza_canadensis_scaffold:1 1 CH_eca_106 3 3 0.0000000120814
Eucalyptus grandis Chr02 1 CH_egr_31 10 12 1.65036e-28
Erythranthe guttata scaffold_2 1 CH_egut_93 4 5 0.000000000729603
Fragaria vesca Fvb6 1 CH_fve_462 2 2 0.000589102
Helianthus annuus HanXRQChr08 1 CH_han_462 3 27 0.0000654426
Lonicera japonica GWHAAZE00000145 1 CH_lonja_647 2 2 0.000898311
Olea europaea chr15 1 CH_oeu_27 4 4 0.000000000225876
Punica granatum NC_045133.1 1 CH_pgr_10 7 8 1.34993e-20
Quercus lobata 3 1 CH_qlo_39 10 32 9.51711e-24
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_769 2 2 0.000597979
Rhododendron simsii chr04 1 CH_rsi_253 3 5 0.00000349698
Salvia bowleyana GWHASIU00000005 1 CH_sbo_421 2 2 0.00045498
Simmondsia chinensis GWHAASQ00000006 1 CH_sci_273 2 2 0.000510856
Sequoiadendron giganteum chr6 1 CH_sgi_22 11 19 8.07558e-32
Schrenkiella parvula ch2-2 1 CH_spa_129 3 6 0.00000371814
Selenicereus undatus Scaffold_33680 1 CH_sun_259 2 2 0.000435983
Selenicereus undatus Scaffold_33676 1 CH_sun_260 2 2 0.000435983
Theobroma cacao Chromosome_4 1 CH_tca_451 2 2 0.000732386
Vitis vinifera chr14 1 CH_vvi_34 7 10 1.44937e-18
Acer truncatum chr2 2 CH_acertr_186 3 5 0.00000260852
Brassica carinata ChrC07 2 CH_bca_735 3 11 0.000150232
Beta vulgaris Chr4_EL10_PGA_scaffold1 2 CH_bvu_285 2 3 0.000745074
Camellia sinensis var. sinensis Chr3 2 CH_camsi_6 11 19 1.6532e-31
Coffea canephora chr2 2 CH_ccan_93 3 22 0.000000418953
Citrus clementina scaffold_9 2 CH_ccl_499 2 2 0.000820311
Carya illinoinensis Chr07 2 CH_cil_169 4 7 0.00000000524842
Daucus carota DCARv2_Chr1 2 CH_dca_60 4 6 0.000000000817032
Davidia involucrata GWHABJS00000002 2 CH_din_44 4 4 0.0000000000262717
Durio zibethinus NW_019167904.1 2 CH_dzi_411 2 2 0.000973326
Erigeron canadensis Conyza_canadensis_scaffold:1 2 CH_eca_106 3 3 0.0000000120814
Eucalyptus grandis Chr02 2 CH_egr_31 10 12 1.65036e-28
Erythranthe guttata scaffold_2 2 CH_egut_93 4 5 0.000000000729603
Fragaria vesca Fvb6 2 CH_fve_462 2 2 0.000589102
Helianthus annuus HanXRQChr08 2 CH_han_462 3 27 0.0000654426
Lonicera japonica GWHAAZE00000145 2 CH_lonja_647 2 2 0.000898311
Olea europaea chr15 2 CH_oeu_27 4 4 0.000000000225876
Punica granatum NC_045133.1 2 CH_pgr_10 7 8 1.34993e-20
Quercus lobata 3 2 CH_qlo_39 10 32 9.51711e-24
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_769 2 2 0.000597979
Rhododendron simsii chr04 2 CH_rsi_253 3 5 0.00000349698
Salvia bowleyana GWHASIU00000005 2 CH_sbo_421 2 2 0.00045498
Simmondsia chinensis GWHAASQ00000006 2 CH_sci_273 2 2 0.000510856
Sequoiadendron giganteum chr6 2 CH_sgi_22 11 19 8.07558e-32
Schrenkiella parvula ch2-2 2 CH_spa_129 3 6 0.00000371814
Selenicereus undatus Scaffold_33680 2 CH_sun_259 2 2 0.000435983
Selenicereus undatus Scaffold_33676 2 CH_sun_260 2 2 0.000435983
Theobroma cacao Chromosome_4 2 CH_tca_451 2 2 0.000732386
Vitis vinifera chr14 2 CH_vvi_34 7 10 1.44937e-18

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001