Functional clusters

Information

  • Type MapMan
  • Description Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-D-glucuronic acid biosynthesis.myo-inositol oxidation pathway (MIOP).myo-inositol oxygenase

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_7 1 CH_aly_416 2 2 0.000660044
Aquilegia oxysepala CHR07 1 CH_aox_284 2 2 0.000481193
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 1 CH_arhy_157 5 12 0.000000000384495
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 1 CH_arhy_422 3 5 0.0000393035
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 1 CH_arhy_448 3 6 0.0000785847
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 1 CH_arhy_449 3 6 0.0000785847
Amborella trichopoda AmTr_v1.0_scaffold00056 1 CH_atr_239 2 3 0.000238313
Camellia sinensis var. sinensis Chr14 1 CH_camsi_249 3 3 0.0000000630811
Corylus avellana 11 1 CH_cav_175 3 8 0.00000493552
Citrus clementina scaffold_1 1 CH_ccl_451 2 2 0.000492187
Carpinus fangiana Cfa01 1 CH_cfa_302 2 2 0.000227204
Corchorus olitorius AWUE01016274.1 1 CH_col_73 2 2 0.000292099
Capsella rubella scaffold_7 1 CH_cru_417 2 2 0.000731154
Erythranthe guttata scaffold_10 1 CH_egut_464 2 2 0.000728147
Helianthus annuus HanXRQChr04 1 CH_han_693 2 2 0.000579643
Helianthus annuus HanXRQChr13 1 CH_han_694 2 2 0.000579643
Hydrangea macrophylla Hma1.2p1_0764F.1 1 CH_hma_350 2 2 0.000333259
Magnolia biondii Chr01 1 CH_mbi_106 3 3 0.00000000353808
Papaver somniferum NC_039359.1 1 CH_pso_479 2 2 0.00013514
Papaver somniferum NC_039359.1 1 CH_pso_612 2 3 0.000405408
Phaseolus vulgaris Chr02 1 CH_pvu_168 3 3 0.000000453468
Phaseolus vulgaris Chr02 1 CH_pvu_74 4 4 0.0000000000833
Quercus lobata 9 1 CH_qlo_69 7 10 6.14136e-19
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_528 3 19 0.0000807471
Solanum pennellii Spenn-ch11 1 CH_spe_183 3 5 0.00000103849
Trochodendron aralioides group3 1 CH_tar_43 4 6 0.0000000000486882
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_327 2 2 0.000278772
Vanilla planifolia CM028150.1 1 CH_vpl_336 3 70 0.000447181
Vitis vinifera chr9 1 CH_vvi_411 2 3 0.000684523
Arabidopsis lyrata scaffold_7 2 CH_aly_416 2 2 0.000660044
Aquilegia oxysepala CHR07 2 CH_aox_284 2 2 0.000481193
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 2 CH_arhy_157 5 12 0.000000000384495
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 2 CH_arhy_422 3 5 0.0000393035
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 2 CH_arhy_448 3 6 0.0000785847
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 2 CH_arhy_449 3 6 0.0000785847
Amborella trichopoda AmTr_v1.0_scaffold00056 2 CH_atr_239 2 3 0.000238313
Camellia sinensis var. sinensis Chr14 2 CH_camsi_249 3 3 0.0000000630811
Corylus avellana 11 2 CH_cav_175 3 8 0.00000493552
Citrus clementina scaffold_1 2 CH_ccl_451 2 2 0.000492187
Carpinus fangiana Cfa01 2 CH_cfa_302 2 2 0.000227204
Corchorus olitorius AWUE01016274.1 2 CH_col_73 2 2 0.000292099
Capsella rubella scaffold_7 2 CH_cru_417 2 2 0.000731154
Erythranthe guttata scaffold_10 2 CH_egut_464 2 2 0.000728147
Helianthus annuus HanXRQChr04 2 CH_han_693 2 2 0.000579643
Helianthus annuus HanXRQChr13 2 CH_han_694 2 2 0.000579643
Hydrangea macrophylla Hma1.2p1_0764F.1 2 CH_hma_350 2 2 0.000333259
Lotus japonicus chr2 2 CH_lja_371 2 2 0.000429046
Magnolia biondii Chr01 2 CH_mbi_106 3 3 0.00000000353808
Papaver somniferum NC_039359.1 2 CH_pso_479 2 2 0.00013514
Papaver somniferum NC_039359.1 2 CH_pso_612 2 3 0.000405408
Phaseolus vulgaris Chr02 2 CH_pvu_168 3 3 0.000000453468
Phaseolus vulgaris Chr02 2 CH_pvu_74 4 4 0.0000000000833
Quercus lobata 9 2 CH_qlo_69 7 10 6.14136e-19
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_528 3 19 0.0000807471
Solanum pennellii Spenn-ch11 2 CH_spe_183 3 5 0.00000103849
Trochodendron aralioides group3 2 CH_tar_43 4 6 0.0000000000486882
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_327 2 2 0.000278772
Vanilla planifolia CM028150.1 2 CH_vpl_336 3 70 0.000447181
Vitis vinifera chr9 2 CH_vvi_411 2 3 0.000684523

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001