Functional clusters

Information

  • Type MapMan
  • Description Carbohydrate metabolism.fermentation.acetic acid biosynthesis.pyruvate decarboxylase (PDC)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_6 1 CH_aly_380 2 2 0.000396027
Arabidopsis thaliana Chr5 1 CH_ath_320 2 2 0.000171895
Carya illinoinensis Chr10 1 CH_cil_250 3 4 0.000000806718
Cucumis sativus L. chr4 1 CH_csa_117 3 3 0.000000209056
Eucalyptus grandis Chr01 1 CH_egr_267 4 4 0.0000000000757894
Gossypium raimondii Chr06 1 CH_gra_369 2 2 0.000321664
Lactuca sativa Lsat_1_v8_lg_2 1 CH_lsa_94 4 5 0.000000000142588
Nelumbo nucifera chr2 1 CH_nnu_79 4 19 0.0000000144464
Oryza sativa ssp. japonica chr05 1 CH_osa_406 2 4 0.000950562
Pisum sativum chr3LG5 1 CH_psa_297 2 2 0.00015649
Sequoiadendron giganteum chr1 1 CH_sgi_929 2 2 0.0000487151
Theobroma cacao Chromosome_5 1 CH_tca_179 3 4 0.000000321816
Arabidopsis lyrata scaffold_6 2 CH_aly_380 2 2 0.000396027
Arabidopsis thaliana Chr5 2 CH_ath_320 2 2 0.000171895
Carya illinoinensis Chr10 2 CH_cil_250 3 4 0.000000806718
Cucumis sativus L. chr4 2 CH_csa_117 3 3 0.000000209056
Eucalyptus grandis Chr01 2 CH_egr_267 4 4 0.0000000000757894
Gossypium hirsutum A09 2 CH_ghi_911 2 2 0.000961256
Gossypium hirsutum D09 2 CH_ghi_912 2 2 0.000961256
Gossypium raimondii Chr06 2 CH_gra_369 2 2 0.000321664
Lactuca sativa Lsat_1_v8_lg_2 2 CH_lsa_94 4 5 0.000000000142588
Nelumbo nucifera chr2 2 CH_nnu_79 4 19 0.0000000144464
Oryza sativa ssp. japonica chr05 2 CH_osa_406 2 4 0.000950562
Pisum sativum chr3LG5 2 CH_psa_297 2 2 0.00015649
Sequoiadendron giganteum chr1 2 CH_sgi_929 2 2 0.0000487151
Theobroma cacao Chromosome_5 2 CH_tca_179 3 4 0.000000321816

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001