Functional clusters

Information

  • Type MapMan
  • Description Carbohydrate metabolism.sucrose metabolism.degradation.invertase activities.acid beta-fructofuranosidase (VIN)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR05 1 CH_aox_88 3 6 0.000000771692
Brassica carinata ChrC04 1 CH_bca_990 2 2 0.00059854
Brassica oleracea C9 1 CH_bol_441 2 3 0.000980536
Carica papaya supercontig_29 1 CH_cpa_370 2 3 0.000855527
Capsella rubella scaffold_2 1 CH_cru_325 2 2 0.000219346
Daucus carota DCARv2_Chr4 1 CH_dca_474 2 2 0.000956663
Erigeron canadensis Conyza_canadensis_scaffold:6 1 CH_eca_481 2 2 0.000673083
Lactuca sativa Lsat_1_v8_lg_3 1 CH_lsa_196 3 3 0.000000221936
Magnolia biondii Chr04 1 CH_mbi_585 2 5 0.000485625
Rhododendron simsii chr09 1 CH_rsi_200 3 5 0.000000249833
Aquilegia oxysepala CHR05 2 CH_aox_88 3 6 0.000000771692
Brassica carinata ChrC04 2 CH_bca_990 2 2 0.00059854
Brassica oleracea C9 2 CH_bol_441 2 3 0.000980536
Carica papaya supercontig_29 2 CH_cpa_370 2 3 0.000855527
Capsella rubella scaffold_2 2 CH_cru_325 2 2 0.000219346
Daucus carota DCARv2_Chr4 2 CH_dca_474 2 2 0.000956663
Erigeron canadensis Conyza_canadensis_scaffold:6 2 CH_eca_481 2 2 0.000673083
Lactuca sativa Lsat_1_v8_lg_3 2 CH_lsa_196 3 3 0.000000221936
Magnolia biondii Chr04 2 CH_mbi_585 2 5 0.000485625
Rhododendron simsii chr09 2 CH_rsi_200 3 5 0.000000249833

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001