Functional clusters

Information

  • Type MapMan
  • Description Carbohydrate metabolism

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Rhododendron simsii chr06 1 CH_rsi_570 5 12 0.000709271
Rhododendron simsii chr06 2 CH_rsi_570 5 12 0.000709271

Available child term results

Ontology identifier Description Number of clusters
3.1.1.1 Carbohydrate metabolism.sucrose metabolism.triose-phosphate translocation.triose phosphate:phosphate translocator 6
3.1.2.2 Carbohydrate metabolism.sucrose metabolism.biosynthesis.cytosolic fructose-bisphosphate aldolase 6
3.1.2.4 Carbohydrate metabolism.sucrose metabolism.biosynthesis.cytosolic phosphoglucose isomerase 4
3.1.2.5 Carbohydrate metabolism.sucrose metabolism.biosynthesis.cytosolic phosphoglucomutase 2
3.1.2.6 Carbohydrate metabolism.sucrose metabolism.biosynthesis.cytosolic UDP-glucose pyrophosphorylase 10
3.1.2.7 Carbohydrate metabolism.sucrose metabolism.biosynthesis.sucrose-phosphate synthase 10
3.1.2.8 Carbohydrate metabolism.sucrose metabolism.biosynthesis.sucrose-phosphate phosphatase 24
3.1.4.1.1 Carbohydrate metabolism.sucrose metabolism.degradation.invertase activities.acid beta-fructofuranosidase (CWIN) 105
3.1.4.1.2 Carbohydrate metabolism.sucrose metabolism.degradation.invertase activities.acid beta-fructofuranosidase (VIN) 20
3.1.4.2 Carbohydrate metabolism.sucrose metabolism.degradation.sucrose synthase 17
3.1.4.3 Carbohydrate metabolism.sucrose metabolism.degradation.hexokinase 14
3.1.4.4 Carbohydrate metabolism.sucrose metabolism.degradation.fructose kinase 26
3.1.5.1 Carbohydrate metabolism.sucrose metabolism.regulation of sucrose/starch partitioning.bifunctional 6-phosphofructo-2-kinase and fructose-2,6-bisphosphatase 10
3.10.1 Carbohydrate metabolism.gluconeogenesis.phosphoenolpyruvate carboxykinase 20
3.10.2.1 Carbohydrate metabolism.gluconeogenesis.pyruvate orthophosphate dikinase activity.pyruvate orthophosphate dikinase 18
3.10.2.2 Carbohydrate metabolism.gluconeogenesis.pyruvate orthophosphate dikinase activity.regulatory pyruvate orthophosphate dikinase kinase 12
3.11.1 Carbohydrate metabolism.fermentation.acetic acid biosynthesis 2
3.11.1.1 Carbohydrate metabolism.fermentation.acetic acid biosynthesis.pyruvate decarboxylase (PDC) 26
3.11.1.2 Carbohydrate metabolism.fermentation.acetic acid biosynthesis.alcohol dehydrogenase (ADH) 94
3.11.1.3 Carbohydrate metabolism.fermentation.acetic acid biosynthesis.aldehyde dehydrogenase (ALDH2B) 23
3.11.2.1 Carbohydrate metabolism.fermentation.lactic acid fermentation.L-lactate dehydrogenase 26
3.12.1 Carbohydrate metabolism.plastidial glycolysis.ATP-dependent phosphofructokinase 2
3.12.4 Carbohydrate metabolism.plastidial glycolysis.glyceraldehyde 3-phosphate dehydrogenase 2
3.13 Carbohydrate metabolism.nucleotide sugar biosynthesis 5
3.13.1.2 Carbohydrate metabolism.nucleotide sugar biosynthesis.GDP-D-mannose biosynthesis.GDP-D-mannose pyrophosphorylase activator (KONJAC) 2
3.13.1.3 Carbohydrate metabolism.nucleotide sugar biosynthesis.GDP-D-mannose biosynthesis.GDP-D-mannose pyrophosphohydrolase (NUDT9) 4
3.13.2.1.1 Carbohydrate metabolism.nucleotide sugar biosynthesis.GDP-L-fucose biosynthesis.de novo biosynthesis.GDP-D-mannose 4,6-dehydratase (MUR1) 7
3.13.2.1.2 Carbohydrate metabolism.nucleotide sugar biosynthesis.GDP-L-fucose biosynthesis.de novo biosynthesis.GDP-L-fucose synthase 8
3.13.2.2.1 Carbohydrate metabolism.nucleotide sugar biosynthesis.GDP-L-fucose biosynthesis.salvage biosynthesis.bifunctional L-fucokinase and GDP-L-fucose pyrophosphorylase 5
3.13.3.1 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-D-glucuronic acid biosynthesis.UDP-D-glucose 6-dehydrogenase 28
3.13.3.2.1 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-D-glucuronic acid biosynthesis.myo-inositol oxidation pathway (MIOP).myo-inositol oxygenase 59
3.13.3.2.2 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-D-glucuronic acid biosynthesis.myo-inositol oxidation pathway (MIOP).D-glucuronic acid kinase 8
3.13.3.2.3 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-D-glucuronic acid biosynthesis.myo-inositol oxidation pathway (MIOP).multifunctional UDP-monosaccharide pyrophosphorylase 6
3.13.4.1 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-D-galacturonic acid biosynthesis.UDP-D-glucuronic acid 4-epimerase 8
3.13.4.2.1 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-D-galacturonic acid biosynthesis.salvage biosynthesis.galacturonokinase 6
3.13.5.1 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-D-xylose biosynthesis.UDP-D-glucuronic acid decarboxylase 18
3.13.6.1 Carbohydrate metabolism.nucleotide sugar biosynthesis.nucleotide rhamnose biosynthesis.UDP-L-rhamnose synthase (RHM) 17
3.13.7.1 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-L-arabinose biosynthesis.UDP-D-xylose 4-epimerase 2
3.13.7.2.1 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-L-arabinose biosynthesis.salvage biosynthesis.L-arabinose kinase 6
3.13.7.3 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-L-arabinose biosynthesis.UDP-L-arabinose mutase 14
3.13.8 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-D-glucose 4-epimerase 10
3.13.9.1.1 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-N-acetylglucosamine biosynthesis.de novo biosynthesis.glutamine:fructose-6-phosphate amidotransferase 8
3.13.9.1.2 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-N-acetylglucosamine biosynthesis.de novo biosynthesis.glucosamine 6-phosphate N-acetyltransferase 4
3.13.9.1.3 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-N-acetylglucosamine biosynthesis.de novo biosynthesis.N-acetylglucosamine-phosphate mutase 6
3.13.9.1.4 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-N-acetylglucosamine biosynthesis.de novo biosynthesis.UDP-N-acetylglucosamine pyrophosphorylase 6
3.13.9.2.1 Carbohydrate metabolism.nucleotide sugar biosynthesis.UDP-N-acetylglucosamine biosynthesis.salvage biosynthesis.N-acetylglucosamine kinase 10
3.2.2.1 Carbohydrate metabolism.starch metabolism.biosynthesis.plastidial phosphoglucose isomerase 6
3.2.2.3 Carbohydrate metabolism.starch metabolism.biosynthesis.ADP-glucose pyrophosphorylase 4
3.2.2.4.1 Carbohydrate metabolism.starch metabolism.biosynthesis.starch synthase activities.starch synthase (SSI) 2
3.2.2.4.2 Carbohydrate metabolism.starch metabolism.biosynthesis.starch synthase activities.starch synthase (SSII) 4
3.2.2.4.3 Carbohydrate metabolism.starch metabolism.biosynthesis.starch synthase activities.starch synthase (SSIII) 10
3.2.2.4.6 Carbohydrate metabolism.starch metabolism.biosynthesis.starch synthase activities.granule-bound starch (amylose) synthase 2
3.2.2.4.7 Carbohydrate metabolism.starch metabolism.biosynthesis.starch synthase activities.amylose biosynthesis regulatory scaffold protein 8
3.2.2.5 Carbohydrate metabolism.starch metabolism.biosynthesis.starch branching enzyme 4
3.2.3.1.1 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.glucan, water dikinase (GWD) 23
3.2.3.1.2 Carbohydrate metabolism.starch metabolism.degradation.phosphorylation.phosphoglucan, water dikinase (PWD) 8
3.2.3.2.2 Carbohydrate metabolism.starch metabolism.degradation.dephosphorylation.phosphoglucan phosphatase (LSF2) 4
3.2.3.2.3 Carbohydrate metabolism.starch metabolism.degradation.dephosphorylation.alpha-amylase-binding scaffold protein (LSF1) 8
3.2.3.3.1.1 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.alpha amylase 41
3.2.3.3.1.2 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.amylase activities.beta amylase 10
3.2.3.3.2.2 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.starch-debranching activities.pullulanase (PU1) 10
3.2.3.3.3 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.plastidial glucanotransferase (DPE1) 4
3.2.3.3.4 Carbohydrate metabolism.starch metabolism.degradation.hydrolysis and phosphorolysis.plastidial alpha-glucan phosphorylase 4
3.2.3.4.1 Carbohydrate metabolism.starch metabolism.degradation.sugar translocation.maltose transporter (MEX) 11
3.2.3.5.1 Carbohydrate metabolism.starch metabolism.degradation.maltose metabolism.cytosolic glucanotransferase (DPE2) 4
3.3.1 Carbohydrate metabolism.trehalose metabolism.trehalose-6-phosphate synthase 10
3.3.2 Carbohydrate metabolism.trehalose metabolism.trehalose-6-phosphate phosphatase 4
3.3.3 Carbohydrate metabolism.trehalose metabolism.trehalase 40
3.4 Carbohydrate metabolism.oligosaccharide metabolism 1
3.4.1 Carbohydrate metabolism.oligosaccharide metabolism.galactinol synthase 58
3.4.3 Carbohydrate metabolism.oligosaccharide metabolism.stachyose synthase 12
3.4.4 Carbohydrate metabolism.oligosaccharide metabolism.raffinose alpha-galactosidase 2
3.4.5 Carbohydrate metabolism.oligosaccharide metabolism.galactinol-sucrose galactosyltransferase 6
3.5.1 Carbohydrate metabolism.sorbitol metabolism.aldose 6-phosphate reductase 35
3.5.2 Carbohydrate metabolism.sorbitol metabolism.sorbitol dehydrogenase 72
3.6.1 Carbohydrate metabolism.mannose metabolism.phosphomannose isomerase (PMI) 2
3.6.2 Carbohydrate metabolism.mannose metabolism.phosphomannomutase 8
3.6.3 Carbohydrate metabolism.mannose metabolism.aldose 6-phosphate reductase 2
3.6.4 Carbohydrate metabolism.mannose metabolism.phosphosugar phosphatase 38
3.7.1 Carbohydrate metabolism.galactose metabolism.D-galactokinase 2
3.8.1 Carbohydrate metabolism.ribose metabolism.ribokinase 12
3.9.1.1 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.glucose-6-phosphate dehydrogenase 8
3.9.1.2 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.6-phosphogluconolactonase 70
3.9.1.3 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.6-phosphogluconate dehydrogenase 8
3.9.2.1 Carbohydrate metabolism.oxidative pentose phosphate pathway.non-oxidative phase.ribose 5-phosphate isomerase 4
3.9.2.2 Carbohydrate metabolism.oxidative pentose phosphate pathway.non-oxidative phase.ribulose-phosphate 3-epimerase 4
3.9.2.3 Carbohydrate metabolism.oxidative pentose phosphate pathway.non-oxidative phase.transketolase 9
3.9.2.4 Carbohydrate metabolism.oxidative pentose phosphate pathway.non-oxidative phase.transaldolase 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001