Functional clusters

Information

  • Type MapMan
  • Description Multi-process regulation.phosphatidylinositol and inositol phosphate system.degradation.phosphatidylinositol phospholipase C (PI-PLC)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 1 CH_acertr_18 5 6 0.0000000000000233435
Arabidopsis lyrata scaffold_8 1 CH_aly_169 3 4 0.00000146363
Avicennia marina ScioBoG_11560_HRSCAF_11609 1 CH_ama_145 2 2 0.000862218
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 1 CH_amhyb_63 3 4 0.00000148776
Aquilegia oxysepala CHR04 1 CH_aox_300 2 2 0.000481193
Aquilegia oxysepala CHR02 1 CH_aox_301 2 2 0.000481193
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 1 CH_arhy_276 3 3 0.000000752906
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 1 CH_arhy_326 3 4 0.00000301114
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 1 CH_arhy_367 3 5 0.00000752664
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 1 CH_arhy_406 3 7 0.0000263348
Arabidopsis thaliana Chr5 1 CH_ath_155 3 4 0.000000413645
Amborella trichopoda AmTr_v1.0_scaffold00007 1 CH_atr_204 2 2 0.0000794407
Brassica carinata ChrC04 1 CH_bca_370 3 3 0.00000138732
Brassica napus A10 1 CH_bna_361 3 4 0.00000928014
Brassica napus C09 1 CH_bna_416 3 5 0.0000231956
Brassica oleracea C9 1 CH_bol_91 4 10 0.0000000523051
Brassica rapa A10 1 CH_bra_147 3 4 0.00000619152
Beta vulgaris Chr7_EL10_PGA_scaffold5 1 CH_bvu_92 3 3 0.000000102821
Camellia sinensis var. sinensis Chr11 1 CH_camsi_202 4 10 0.00000000764882
Cannabis sativa NC_044375.1 1 CH_cansat_345 2 2 0.000393985
Cicer arietinum L. Ca_LG2_v3 1 CH_car_49 3 3 0.000000181733
Corylus avellana 11 1 CH_cav_430 2 2 0.000460017
Chara braunii BFEA01000022 1 CH_cbr_126 2 2 0.000431562
Coffea canephora chr2 1 CH_ccan_286 2 7 0.000255531
Citrus clementina scaffold_8 1 CH_ccl_151 3 3 0.000000201881
Carpinus fangiana Cfa04 1 CH_cfa_315 2 2 0.000227204
Cardamine hirsuta Chr8 1 CH_chi_154 3 4 0.0000010032
Carya illinoinensis Chr02 1 CH_cil_564 2 2 0.000929742
Carya illinoinensis Chr01 1 CH_cil_565 2 2 0.000929742
Cucumis melo chr12 1 CH_cme_280 2 2 0.000400267
Corchorus olitorius AWUE01019121.1 1 CH_col_90 2 2 0.000292099
Carica papaya supercontig_112 1 CH_cpa_30 4 14 0.0000000128912
Chenopodium quinoa C_Quinoa_Scaffold_2716 1 CH_cqu_106 4 6 0.00000000236886
Chenopodium quinoa C_Quinoa_Scaffold_2465 1 CH_cqu_96 4 5 0.00000000078976
Capsella rubella scaffold_8 1 CH_cru_187 3 4 0.00000179597
Cucumis sativus L. chr1 1 CH_csa_303 2 2 0.000500856
Davidia involucrata GWHABJS00000007 1 CH_din_164 3 4 0.00000126049
Durio zibethinus NW_019168159.1 1 CH_dzi_121 3 4 0.000000721738
Erigeron canadensis Conyza_canadensis_scaffold:9 1 CH_eca_227 3 7 0.0000126783
Eutrema salsugineum scaffold_2 1 CH_esa_102 3 3 0.000000487118
Fragaria x ananassa Fvb3-2 1 CH_fan_233 3 6 0.00000293699
Fragaria vesca Fvb3 1 CH_fve_172 3 5 0.0000005205
Fragaria vesca Fvb7 1 CH_fve_459 2 2 0.000589102
Gossypium hirsutum A05 1 CH_ghi_156 4 5 0.000000000873714
Gossypium hirsutum D05 1 CH_ghi_171 4 6 0.00000000262071
Glycine max Gm14 1 CH_gma_101 4 5 0.00000000111944
Glycine max Gm11 1 CH_gma_210 3 3 0.000000983252
Glycine max Gm18 1 CH_gma_211 3 3 0.000000983252
Glycine max Gm02 1 CH_gma_212 3 3 0.000000983252
Gossypium raimondii Chr09 1 CH_gra_89 4 6 0.000000000873485
Lotus japonicus Contig00357 1 CH_lja_168 3 3 0.000000920437
Lonicera japonica GWHAAZE00000001 1 CH_lonja_642 2 2 0.000898311
Lonicera japonica GWHAAZE00000002 1 CH_lonja_643 2 2 0.000898311
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_210 3 3 0.000000475577
Magnolia biondii Chr14 1 CH_mbi_350 2 2 0.0000485661
Malus domestica Chr01 1 CH_mdo_752 2 2 0.000796344
Malus domestica Chr03 1 CH_mdo_753 2 2 0.000796344
Malus domestica Chr07 1 CH_mdo_754 2 2 0.000796344
Manihot esculenta Chromosome02 1 CH_mes_178 3 3 0.000000195763
Medicago truncatula chr5 1 CH_mtr_358 3 4 0.000000850717
Medicago truncatula chr3 1 CH_mtr_426 3 7 0.00000744125
Olea europaea chr11 1 CH_oeu_323 2 2 0.000320273
Prunus persica Pp06 1 CH_ppe_178 3 3 0.0000000834721
Prunus persica Pp02 1 CH_ppe_516 2 2 0.000745962
Pisum sativum chr2LG1 1 CH_psa_198 3 13 0.0000408147
Papaver somniferum NW_020628818.1 1 CH_pso_126 4 5 0.000000000084834
Papaver somniferum NC_039366.1 1 CH_pso_131 4 6 0.000000000254481
Populus trichocarpa Chr01 1 CH_ptr_190 3 3 0.00000028064
Phaseolus vulgaris Chr01 1 CH_pvu_155 3 3 0.000000283418
Phaseolus vulgaris Chr08 1 CH_pvu_156 3 3 0.000000283418
Quercus lobata 8 1 CH_qlo_1054 2 3 0.000929264
Quercus lobata 1 1 CH_qlo_898 2 2 0.000309773
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_284 3 4 0.0000001907
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_453 3 17 0.0000323917
Striga asiatica scaffold60 1 CH_sas_157 2 2 0.000938057
Salvia bowleyana GWHASIU00000002 1 CH_sbo_146 3 3 0.000000108681
Salix brachista GWHAAZH00000016 1 CH_sbr_417 2 2 0.000945209
Salix brachista GWHAAZH00000010 1 CH_sbr_418 2 2 0.000945209
Sequoiadendron giganteum chr8 1 CH_sgi_1138 2 2 0.000146145
Schrenkiella parvula ch6-6 1 CH_spa_113 3 3 0.000000781109
Solanum pennellii Spenn-ch06 1 CH_spe_570 2 2 0.00093406
Solanum tuberosum ST4.03ch06 1 CH_stu_612 2 2 0.000768679
Trochodendron aralioides group1 1 CH_tar_142 3 3 0.000000189236
Theobroma cacao Chromosome_9 1 CH_tca_155 3 4 0.00000012873
Trifolium pratense Tp57577_TGAC_v2_LG5 1 CH_tpr_112 3 3 0.000000300841
Vigna mungo CM024073.1 1 CH_vmu_100 3 3 0.000000219194
Vigna mungo CM024070.1 1 CH_vmu_101 3 3 0.000000219194
Vitis vinifera chr6 1 CH_vvi_169 3 3 0.000000303754
Acer truncatum chr3 2 CH_acertr_18 5 6 0.0000000000000233435
Arabidopsis lyrata scaffold_8 2 CH_aly_169 3 4 0.00000146363
Avicennia marina ScioBoG_11560_HRSCAF_11609 2 CH_ama_145 2 2 0.000862218
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 2 CH_amhyb_63 3 4 0.00000148776
Aquilegia oxysepala CHR04 2 CH_aox_300 2 2 0.000481193
Aquilegia oxysepala CHR02 2 CH_aox_301 2 2 0.000481193
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 2 CH_arhy_276 3 3 0.000000752906
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 2 CH_arhy_326 3 4 0.00000301114
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 2 CH_arhy_367 3 5 0.00000752664
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 2 CH_arhy_406 3 7 0.0000263348
Arabidopsis thaliana Chr5 2 CH_ath_155 3 4 0.000000413645
Amborella trichopoda AmTr_v1.0_scaffold00007 2 CH_atr_204 2 2 0.0000794407
Brassica carinata ChrC04 2 CH_bca_370 3 3 0.00000138732
Brassica oleracea C9 2 CH_bol_91 4 10 0.0000000523051
Brassica rapa A10 2 CH_bra_147 3 4 0.00000619152
Beta vulgaris Chr7_EL10_PGA_scaffold5 2 CH_bvu_92 3 3 0.000000102821
Camellia sinensis var. sinensis Chr11 2 CH_camsi_202 4 10 0.00000000764882
Cannabis sativa NC_044375.1 2 CH_cansat_345 2 2 0.000393985
Cicer arietinum L. Ca_LG2_v3 2 CH_car_49 3 3 0.000000181733
Corylus avellana 11 2 CH_cav_430 2 2 0.000460017
Chara braunii BFEA01000022 2 CH_cbr_126 2 2 0.000431562
Coffea canephora chr2 2 CH_ccan_286 2 7 0.000255531
Citrus clementina scaffold_8 2 CH_ccl_151 3 3 0.000000201881
Carpinus fangiana Cfa04 2 CH_cfa_315 2 2 0.000227204
Cardamine hirsuta Chr8 2 CH_chi_154 3 4 0.0000010032
Carya illinoinensis Chr02 2 CH_cil_564 2 2 0.000929742
Carya illinoinensis Chr01 2 CH_cil_565 2 2 0.000929742
Cucumis melo chr12 2 CH_cme_280 2 2 0.000400267
Corchorus olitorius AWUE01019121.1 2 CH_col_90 2 2 0.000292099
Carica papaya supercontig_112 2 CH_cpa_30 4 14 0.0000000128912
Chenopodium quinoa C_Quinoa_Scaffold_2716 2 CH_cqu_106 4 6 0.00000000236886
Chenopodium quinoa C_Quinoa_Scaffold_2465 2 CH_cqu_96 4 5 0.00000000078976
Capsella rubella scaffold_8 2 CH_cru_187 3 4 0.00000179597
Cucumis sativus L. chr1 2 CH_csa_303 2 2 0.000500856
Davidia involucrata GWHABJS00000007 2 CH_din_164 3 4 0.00000126049
Durio zibethinus NW_019168159.1 2 CH_dzi_121 3 4 0.000000721738
Erigeron canadensis Conyza_canadensis_scaffold:9 2 CH_eca_227 3 7 0.0000126783
Eucalyptus grandis Chr10 2 CH_egr_485 3 3 0.000000287747
Eucalyptus grandis Chr10 2 CH_egr_521 3 4 0.00000115083
Eutrema salsugineum scaffold_2 2 CH_esa_102 3 3 0.000000487118
Fragaria x ananassa Fvb3-2 2 CH_fan_233 3 6 0.00000293699
Fragaria vesca Fvb3 2 CH_fve_172 3 5 0.0000005205
Fragaria vesca Fvb7 2 CH_fve_459 2 2 0.000589102
Gossypium hirsutum A05 2 CH_ghi_156 4 5 0.000000000873714
Gossypium hirsutum D05 2 CH_ghi_171 4 6 0.00000000262071
Glycine max Gm14 2 CH_gma_101 4 5 0.00000000111944
Glycine max Gm11 2 CH_gma_210 3 3 0.000000983252
Glycine max Gm18 2 CH_gma_211 3 3 0.000000983252
Glycine max Gm02 2 CH_gma_212 3 3 0.000000983252
Gossypium raimondii Chr09 2 CH_gra_89 4 6 0.000000000873485
Lotus japonicus Contig00357 2 CH_lja_168 3 3 0.000000920437
Lotus japonicus chr6 2 CH_lja_233 3 7 0.0000321865
Lonicera japonica GWHAAZE00000001 2 CH_lonja_642 2 2 0.000898311
Lonicera japonica GWHAAZE00000002 2 CH_lonja_643 2 2 0.000898311
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_210 3 3 0.000000475577
Magnolia biondii Chr14 2 CH_mbi_350 2 2 0.0000485661
Malus domestica Chr01 2 CH_mdo_752 2 2 0.000796344
Malus domestica Chr03 2 CH_mdo_753 2 2 0.000796344
Malus domestica Chr07 2 CH_mdo_754 2 2 0.000796344
Manihot esculenta Chromosome02 2 CH_mes_178 3 3 0.000000195763
Olea europaea chr11 2 CH_oeu_323 2 2 0.000320273
Prunus persica Pp06 2 CH_ppe_178 3 3 0.0000000834721
Prunus persica Pp02 2 CH_ppe_516 2 2 0.000745962
Pisum sativum chr2LG1 2 CH_psa_198 3 13 0.0000408147
Papaver somniferum NW_020628818.1 2 CH_pso_126 4 5 0.000000000084834
Papaver somniferum NC_039366.1 2 CH_pso_131 4 6 0.000000000254481
Populus trichocarpa Chr01 2 CH_ptr_190 3 3 0.00000028064
Phaseolus vulgaris Chr01 2 CH_pvu_155 3 3 0.000000283418
Phaseolus vulgaris Chr08 2 CH_pvu_156 3 3 0.000000283418
Quercus lobata 8 2 CH_qlo_1054 2 3 0.000929264
Quercus lobata 1 2 CH_qlo_898 2 2 0.000309773
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_284 3 4 0.0000001907
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_453 3 17 0.0000323917
Striga asiatica scaffold60 2 CH_sas_157 2 2 0.000938057
Salvia bowleyana GWHASIU00000002 2 CH_sbo_146 3 3 0.000000108681
Salix brachista GWHAAZH00000016 2 CH_sbr_417 2 2 0.000945209
Salix brachista GWHAAZH00000010 2 CH_sbr_418 2 2 0.000945209
Sequoiadendron giganteum chr8 2 CH_sgi_1138 2 2 0.000146145
Schrenkiella parvula ch6-6 2 CH_spa_113 3 3 0.000000781109
Solanum pennellii Spenn-ch06 2 CH_spe_570 2 2 0.00093406
Solanum tuberosum ST4.03ch06 2 CH_stu_612 2 2 0.000768679
Trochodendron aralioides group1 2 CH_tar_142 3 3 0.000000189236
Theobroma cacao Chromosome_9 2 CH_tca_155 3 4 0.00000012873
Trifolium pratense Tp57577_TGAC_v2_LG5 2 CH_tpr_112 3 3 0.000000300841
Vigna mungo CM024073.1 2 CH_vmu_100 3 3 0.000000219194
Vigna mungo CM024070.1 2 CH_vmu_101 3 3 0.000000219194
Vitis vinifera chr6 2 CH_vvi_169 3 3 0.000000303754

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001