Functional clusters

Information

  • Type MapMan
  • Description Multi-process regulation.Programmed Cell Death (PCD) system.BON-interacting PCD co-suppressor (BAP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Actinidia chinensis Lachesis_group0 1 CH_ach_287 2 4 0.000977694
Avicennia marina ScioBoG_19743_HRSCAF_19834 1 CH_ama_106 2 2 0.000258665
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 1 CH_arhy_129 4 4 0.0000000000169061
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 1 CH_arhy_47 6 8 3.18203e-18
Brassica carinata ChrB02 1 CH_bca_354 3 4 0.000000784066
Camellia sinensis var. sinensis Chr6 1 CH_camsi_316 3 7 0.000000441497
Cannabis sativa NC_044371.1 1 CH_cansat_103 3 4 0.0000000258707
Capsicum annuum PGAv.1.6.scaffold170 1 CH_can_360 2 2 0.000247831
Citrus clementina scaffold_3 1 CH_ccl_337 2 2 0.0000820311
Carya illinoinensis Chr01 1 CH_cil_90 4 4 0.000000000000714457
Citrullus lanatus CG_Chr05 1 CH_cla_141 2 2 0.0000887115
Cucumis melo chr06 1 CH_cme_202 2 2 0.0000667111
Cucumis sativus L. chr3 1 CH_csa_115 3 4 0.000000167232
Eucalyptus grandis Chr05 1 CH_egr_44 8 10 3.33643e-26
Erythranthe guttata scaffold_2 1 CH_egut_320 2 2 0.0000728147
Fragaria vesca Fvb7 1 CH_fve_285 2 2 0.0000589102
Glycine max Gm03 1 CH_gma_17 7 8 2.15516e-20
Glycine max Gm07 1 CH_gma_47 5 6 0.000000000000407914
Lupinus albus Lalb_Chr10 1 CH_lal_43 4 5 0.0000000000325258
Lonicera japonica GWHAAZE00000009 1 CH_lonja_405 2 2 0.0000598874
Magnolia biondii Chr04 1 CH_mbi_648 2 2 0.000728491
Magnolia biondii Chr12 1 CH_mbi_98 4 12 0.00000000255052
Malus domestica Chr07 1 CH_mdo_76 4 4 0.00000000000245404
Manihot esculenta Chromosome01 1 CH_mes_380 2 2 0.000183189
Medicago truncatula chr8 1 CH_mtr_7 11 13 3.25363e-36
Punica granatum NC_045127.1 1 CH_pgr_338 2 2 0.000450214
Punica granatum NC_045130.1 1 CH_pgr_339 2 2 0.000450214
Prunus persica Pp02 1 CH_ppe_358 2 2 0.0000745962
Pisum sativum chr4LG4 1 CH_psa_107 3 3 0.000000081633
Pisum sativum chr4LG4 1 CH_psa_415 2 2 0.000782452
Populus trichocarpa Chr14 1 CH_ptr_395 2 2 0.0001734
Phaseolus vulgaris Chr10 1 CH_pvu_125 5 45 0.0000000334387
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_190 3 3 0.00000000238391
Rhododendron simsii chr07 1 CH_rsi_74 4 5 0.00000000000403105
Striga asiatica scaffold277 1 CH_sas_87 2 3 0.000187606
Salvia bowleyana GWHASIU00000006 1 CH_sbo_293 2 2 0.000045498
Salix brachista GWHAAZH00000014 1 CH_sbr_95 3 3 0.0000000238253
Sechium edule LG12 1 CH_sed_72 3 3 0.0000000305391
Trifolium pratense Tp57577_TGAC_v2_LG5 1 CH_tpr_22 4 4 0.00000000000650703
Tripterygium wilfordii NC_052239.1 1 CH_twi_81 3 3 0.0000000186494
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_88 3 3 0.0000000129529
Vigna mungo CM024078.1 1 CH_vmu_122 3 5 0.00000125227
Vigna mungo CM024070.1 1 CH_vmu_433 2 2 0.000969211
Actinidia chinensis Lachesis_group0 2 CH_ach_287 2 4 0.000977694
Avicennia marina ScioBoG_19743_HRSCAF_19834 2 CH_ama_106 2 2 0.000258665
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.12 2 CH_arhy_129 4 4 0.0000000000169061
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.02 2 CH_arhy_47 6 8 3.18203e-18
Brassica carinata ChrB02 2 CH_bca_354 3 4 0.000000784066
Camellia sinensis var. sinensis Chr6 2 CH_camsi_316 3 7 0.000000441497
Cannabis sativa NC_044371.1 2 CH_cansat_103 3 4 0.0000000258707
Capsicum annuum PGAv.1.6.scaffold170 2 CH_can_360 2 2 0.000247831
Citrus clementina scaffold_3 2 CH_ccl_337 2 2 0.0000820311
Carya illinoinensis Chr01 2 CH_cil_90 4 4 0.000000000000714457
Citrullus lanatus CG_Chr05 2 CH_cla_141 2 2 0.0000887115
Cucumis melo chr06 2 CH_cme_202 2 2 0.0000667111
Cucumis sativus L. chr3 2 CH_csa_115 3 4 0.000000167232
Eucalyptus grandis Chr05 2 CH_egr_44 8 10 3.33643e-26
Erythranthe guttata scaffold_2 2 CH_egut_320 2 2 0.0000728147
Fragaria vesca Fvb7 2 CH_fve_285 2 2 0.0000589102
Gossypium hirsutum D12 2 CH_ghi_726 2 2 0.000400523
Glycine max Gm03 2 CH_gma_17 7 8 2.15516e-20
Glycine max Gm07 2 CH_gma_47 5 6 0.000000000000407914
Lupinus albus Lalb_Chr10 2 CH_lal_43 4 5 0.0000000000325258
Lotus japonicus chr3 2 CH_lja_225 3 11 0.000012647
Lotus japonicus chr1 2 CH_lja_416 2 2 0.000715077
Lonicera japonica GWHAAZE00000009 2 CH_lonja_405 2 2 0.0000598874
Magnolia biondii Chr04 2 CH_mbi_648 2 2 0.000728491
Magnolia biondii Chr12 2 CH_mbi_98 4 12 0.00000000255052
Malus domestica Chr07 2 CH_mdo_76 4 4 0.00000000000245404
Manihot esculenta Chromosome01 2 CH_mes_380 2 2 0.000183189
Punica granatum NC_045127.1 2 CH_pgr_338 2 2 0.000450214
Punica granatum NC_045130.1 2 CH_pgr_339 2 2 0.000450214
Prunus persica Pp02 2 CH_ppe_358 2 2 0.0000745962
Pisum sativum chr4LG4 2 CH_psa_107 3 3 0.000000081633
Pisum sativum chr4LG4 2 CH_psa_415 2 2 0.000782452
Populus trichocarpa Chr14 2 CH_ptr_395 2 2 0.0001734
Phaseolus vulgaris Chr10 2 CH_pvu_125 5 45 0.0000000334387
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_190 3 3 0.00000000238391
Rhododendron simsii chr07 2 CH_rsi_74 4 5 0.00000000000403105
Striga asiatica scaffold277 2 CH_sas_87 2 3 0.000187606
Salvia bowleyana GWHASIU00000006 2 CH_sbo_293 2 2 0.000045498
Salix brachista GWHAAZH00000014 2 CH_sbr_95 3 3 0.0000000238253
Sechium edule LG12 2 CH_sed_72 3 3 0.0000000305391
Trifolium pratense Tp57577_TGAC_v2_LG5 2 CH_tpr_22 4 4 0.00000000000650703
Tripterygium wilfordii NC_052239.1 2 CH_twi_81 3 3 0.0000000186494
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_88 3 3 0.0000000129529
Vigna mungo CM024078.1 2 CH_vmu_122 3 5 0.00000125227
Vigna mungo CM024070.1 2 CH_vmu_433 2 2 0.000969211

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001